View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_42 (Length: 300)
Name: NF0818_high_42
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 127 - 270
Target Start/End: Complemental strand, 37112667 - 37112523
Alignment:
| Q |
127 |
cagaagcagggtaatattcatactgttccgttataaaacccaaggttttgcttctattgcattgaaaaacaaagcaaaaga-ttgaatttctcaaagcaa |
225 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37112667 |
cagaagcagggtaatattcatatcgttcctttataaaacccaaggttttgcttctattgcattgaaaaacaaagcaaaagagttgaatttctcaaagcaa |
37112568 |
T |
|
| Q |
226 |
tggggttaccaactcctacccttcactttctccttcaaattcttc |
270 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37112567 |
tggggttaccaattcctacccttcactttctccttcaaattcttc |
37112523 |
T |
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