View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_46 (Length: 285)
Name: NF0818_high_46
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 18525287 - 18525542
Alignment:
| Q |
1 |
cagtgttgtatt-attacaatcaagaattggaggggaccaacgaacctctttactgatagtttgatttgagggattaattctaacatcaaatgatttaag |
99 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
18525287 |
cagtgttgtatttaatacaatcaagaattggaggggaccaacgaacctctttactgatagttggctttgagagattaattctaacatcaaatgatttaag |
18525386 |
T |
|
| Q |
100 |
gatggagaagtcggtgattgatgagttagcagaaagatttgaagcattgtcagaaattgaggcagctgacagaactaagttaaaggttgatctgatagtg |
199 |
Q |
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| T |
18525387 |
gatggagaagtcagtgattgatgagttagtagaaagatttgaagcattgtcagaaattgaggcacctgacagaactaagttaaaggttgatctgatagtg |
18525486 |
T |
|
| Q |
200 |
aannnnnnnattattgaacctcctttgattcctgcaataccatatggtgctgaaaca |
256 |
Q |
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| T |
18525487 |
aa-atttttattattgaacctcctttgattcctgcaataccatatggtgctgaaaca |
18525542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 38360273 - 38360212
Alignment:
| Q |
71 |
ggattaattctaacatcaaatgatttaaggatggagaagtcggtgattgatgagttagcaga |
132 |
Q |
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|||||||||||||| ||||| |||||||||| || ||||| ||||||||||| |||||||| |
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| T |
38360273 |
ggattaattctaacttcaaagaatttaaggatagaaaagtctgtgattgatgaattagcaga |
38360212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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