View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_high_6 (Length: 589)
Name: NF0818_high_6
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 1e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 176 - 417
Target Start/End: Complemental strand, 7669309 - 7669069
Alignment:
| Q |
176 |
agttgaagagatagacaaaatgaatataacaataatttaaaaataatattatcannnnnnnnatcaaattatcatattgattttatctctctcaaaatga |
275 |
Q |
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| T |
7669309 |
agttgaagagatagacaaaatgaatataacaataatttaaaaataatattat-aatttttttatcaaattattatattgattttatctcactcaaaatga |
7669211 |
T |
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| Q |
276 |
aaagtgtccaataaataaataaaaatttgtgtaaatctctttataagagttatttgagtcttaaggtcttcactatcttaatattaagatttaagacacc |
375 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
7669210 |
aaagtgtcaaataaataaataaaaatttgtgtaaatctcattataagagttatttgagtcttaaggtcatcactatcttaatattaagatgtaagacacc |
7669111 |
T |
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| Q |
376 |
attttatcattttaaaattattgttaaatttttatagtgcaa |
417 |
Q |
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| T |
7669110 |
attttttcattttaaaattattgttaaatttttttagtgcaa |
7669069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 7669201 - 7669069
Alignment:
| Q |
2 |
aataaataaataaaaatttgtgtaaatctctttataagagttatttgagtcttaaggtcttcactatcttaatattaagatttaagacaccattttatca |
101 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |
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| T |
7669201 |
aataaataaataaaaatttgtgtaaatctcattataagagttatttgagtcttaaggtcatcactatcttaatattaagatgtaagacaccattttttca |
7669102 |
T |
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| Q |
102 |
ttttaaaattattgttaaatttttatagtgcaa |
134 |
Q |
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| T |
7669101 |
ttttaaaattattgttaaatttttttagtgcaa |
7669069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 459 - 589
Target Start/End: Complemental strand, 7669309 - 7669180
Alignment:
| Q |
459 |
agttgaagagatagacaaaatgaatataacaataatttaaaaataatattatcannnnnnnnatcaaattatcatattgattttatctctctcaaaatga |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||| |
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| T |
7669309 |
agttgaagagatagacaaaatgaatataacaataatttaaaaataatattat-aatttttttatcaaattattatattgattttatctcactcaaaatga |
7669211 |
T |
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| Q |
559 |
aaagtgtccaataaataaataaaaatttgtg |
589 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
7669210 |
aaagtgtcaaataaataaataaaaatttgtg |
7669180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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