View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_high_9 (Length: 519)

Name: NF0818_high_9
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_high_9
NF0818_high_9
[»] chr4 (8 HSPs)
chr4 (95-508)||(18391002-18391415)
chr4 (255-504)||(19338809-19339058)
chr4 (95-481)||(16658906-16659292)
chr4 (95-444)||(45179461-45179810)
chr4 (94-225)||(1666018-1666149)
chr4 (94-186)||(19339090-19339182)
chr4 (94-203)||(36647825-36647934)
chr4 (94-203)||(1851389-1851498)
[»] chr3 (4 HSPs)
chr3 (94-504)||(34011450-34011860)
chr3 (94-504)||(4187745-4188153)
chr3 (95-501)||(33284976-33285382)
chr3 (95-201)||(48101833-48101939)
[»] chr8 (3 HSPs)
chr8 (94-504)||(38616238-38616648)
chr8 (94-225)||(44354746-44354877)
chr8 (94-504)||(36038695-36039105)
[»] scaffold0163 (1 HSPs)
scaffold0163 (95-501)||(33112-33518)
[»] chr7 (2 HSPs)
chr7 (410-501)||(8398185-8398276)
chr7 (94-203)||(7082488-7082597)
[»] chr1 (3 HSPs)
chr1 (94-225)||(16090255-16090386)
chr1 (277-447)||(7326491-7326661)
chr1 (95-203)||(45032365-45032473)
[»] scaffold0169 (1 HSPs)
scaffold0169 (94-203)||(20221-20330)
[»] scaffold0134 (1 HSPs)
scaffold0134 (95-203)||(36322-36430)
[»] chr5 (1 HSPs)
chr5 (108-271)||(25040572-25040734)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 95 - 508
Target Start/End: Original strand, 18391002 - 18391415
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |    
T  18391002 tttgatattttacatagcgatgtatggacatcttcggtcttaagttcattaggtcacaaatattatgttttgtttttgtatgattactcaaatttttt-t 18391100  T
Q  195 ggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattca 294  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |    
T  18391101 ggacatttcccatttcacaaaaatctcaagtatactcttgctttcaaaaactctgtgcttacataaacacacaatttcaaaaggaaattaaaaccattta 18391200  T
Q  295 gtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcattttt-gtttgtcttgcccatatacatcttctca 393  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  18391201 gtgtgacaatggttgtgagtttgtaaataacaattttcgaaaaacatgtgaaaccaaaggaattcatttttcgtttgtcttgcccatatacatcttctca 18391300  T
Q  394 aaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctc 493  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||     
T  18391301 aaatggaaaatctaaacaaaaaatacgttccattaacaatattattcgaactttgttactttgtgcatcgttaccatcatcattttggcatcatgctcta 18391400  T
Q  494 gaaatggcaacctat 508  Q
    |||||| ||||||||    
T  18391401 gaaatgacaacctat 18391415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 255 - 504
Target Start/End: Complemental strand, 19339058 - 19338809
Alignment:
Q  255 acataaacacacaatttcaaaaggaaattaaaaccattcagtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatgg 354  Q
    |||| ||||||||||||||||  ||||||||||| ||||| |||||||| ||  |||| ||||| ||||  |||||||||||| | |||||| | |||||    
T  19339058 acatcaacacacaatttcaaagagaaattaaaacaattcaatgtgacaacggcggtgaatatgtcaatagtaattttcgaaaaatgtgtgaagctaatgg 19338959  T
Q  355 aattcatttttgtttgtcttgcccatatacatcttctcaaaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttactt 454  Q
    ||||  |||| |||||||||| || || ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||| ||    
T  19338958 aattgtttttcgtttgtcttgtccttacacatcttctcaaaatggtaaatctgaacgaaaaatatggtccattaacaatattattcgaactttattaatt 19338859  T
Q  455 catgcatcgttacccacatcattttggcatcatgctctcgaaatggcaac 504  Q
    || || || |||||  | ||||||||||| |||||| | |||||| ||||    
T  19338858 cacgcgtcattaccatcttcattttggcaccatgctttagaaatgacaac 19338809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 95 - 481
Target Start/End: Complemental strand, 16659292 - 16658906
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||| ||||||| |||||||||||||||||  | ||||| ||   |||||| |||||||||||| | ||||||||| | || || ||||||||||    
T  16659292 tttgatattctacatagtgatgtatggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgt 16659193  T
Q  195 ggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattca 294  Q
    ||||||| | ||||||||| ||||||||||| ||  ||   ||||||||| | || |||||||| || ||||||||||||  ||| || ||||| |||||    
T  16659192 ggacattccccatttcacataaatctcaagtttatcctatttttcaaaaaatgcgagcttacatcaaaacacaatttcaacgggatatcaaaacaattca 16659093  T
Q  295 gtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctcaa 394  Q
     ||||| |||||| | || |||||   ||| |||||||||||  | ||||||   |||||||||   ||| || | || || || ||||| ||| |||||    
T  16659092 atgtgataatggtggagaatatgtctctaataattttcgaaatatgtgtgaacttaatggaatttcctttcgtctctcatgtccttatacctctcctcaa 16658993  T
Q  395 aatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttgg 481  Q
    ||||| ||| |||| ||||||||||| |||||||| || |||||||||||||| ||| ||||||||||  ||||  |||||||||||    
T  16658992 aatggtaaaactgagcgaaaaatacgatccattaataacattattcgaactttattaattcatgcatccctacctccatcattttgg 16658906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 444
Target Start/End: Original strand, 45179461 - 45179810
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    |||||||| |||||||| ||||||||||||||||| || || ||||| |||||||| ||||||||||| || ||||||||| | || |||||||  ||||    
T  45179461 tttgatatcttacatagtgatgtatggacatctcccgtattgagttcgttaggtcacaaatattatgtgctttttttggataactattcaaattacttgt 45179560  T
Q  195 ggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattca 294  Q
    |||| ||||  || ||||||||||||||||| || || |  ||||||||| |    || | ||| ||||| |||||||||  ||||||||||| ||| ||    
T  45179561 ggacttttccaatctcacaaaaatctcaagtttattcctcttttcaaaaattaaaagcatccatcaacactcaatttcaacgggaaattaaaaacataca 45179660  T
Q  295 gtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctcaa 394  Q
    |||||||||||||   || |||||||||    | |||| |||  | |||||||| || || |||  |||| || | || ||||| || ||||| ||||||    
T  45179661 gtgtgacaatggtaaagaatatgtaaatggtcagtttcaaaacctttgtgaaacaaacggcatttcttttcgtctatcgtgcccttacacatcatctcaa 45179760  T
Q  395 aatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaac 444  Q
    ||||| | | ||||| ||||||| |||||||| || || || ||||||||    
T  45179761 aatggtacagctgaaagaaaaatccgttccataaataacatcattcgaac 45179810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 1666018 - 1666149
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    ||||||||| |||||||| ||||||||||||||||| || || ||| | |  |||||| |||||||||| || | ||||||||| || || ||||| |||    
T  1666018 atttgatatattacatagtgatgtatggacatctcccgtattgagtacttccggtcatgaatattatgtgctctatttggatgactattcgaatttcttg 1666117  T
Q  194 tggacatttctcatttcacaaaaatctcaagt 225  Q
    ||||| || |  |||||||||||||| |||||    
T  1666118 tggactttcccaatttcacaaaaatcgcaagt 1666149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 19339182 - 19339090
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaa 186  Q
    |||| ||||||||||||| ||||||||||| ||||| || ||||||||| | ||||| || ||||||||||| || |||||| |||| |||||    
T  19339182 atttcatattttacatagtgatgtatggacctctcctgttttaagttcagttggtcacaattattatgttcttttcttggataattattcaaa 19339090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 36647825 - 36647934
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||| ||| | ||||| ||| | ||||||||||| || || ||||| |  || |||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  36647825 atttgacattatccatagtgatatttggacatctcctgttttgagttcttcgggccatagatattatgttttgtttgtggatgactactctaattttttg 36647924  T
Q  194 tggacatttc 203  Q
    ||||||||||    
T  36647925 tggacatttc 36647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 1851389 - 1851498
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||| ||| | ||||| ||| | ||||||||||| || || ||||| |  || |||| |||||||||| ||||  ||||||| ||||| |||||||||    
T  1851389 atttgacattatccatagtgatatttggacatctcctgttttgagttcttcgggccatagatattatgttttgttggtggatgactactctaattttttg 1851488  T
Q  194 tggacatttc 203  Q
    ||||||||||    
T  1851489 tggacatttc 1851498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 7e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 94 - 504
Target Start/End: Original strand, 34011450 - 34011860
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||||||||||||||| ||||||||||| |||||  | ||||||||| | ||||| |||||||||||||| || |||||| |||| ||||||||||||    
T  34011450 atttgatattttacatagtgatgtatggacctctcctattttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttg 34011549  T
Q  194 tggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattc 293  Q
    ||||| ||||  || ||||| ||||| ||||| ||  |    ||| |||||||  | ||  |||| ||||||||||||||||  ||||||||||| ||||    
T  34011550 tggacttttccaatgtcacataaatcccaagtttatccaatttttgaaaaactaagagcacacatcaacacacaatttcaaagagaaattaaaacaattc 34011649  T
Q  294 agtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctca 393  Q
    | |||||||| ||  |||| ||||| ||||  ||||||| |||| | |||||| | |||||||||  |||| |||||||||| || || |||||||||||    
T  34011650 aatgtgacaacggcggtgaatatgtcaatagtaattttcaaaaaatgtgtgaagctaatggaattgtttttcgtttgtcttgtccttacacatcttctca 34011749  T
Q  394 aaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctc 493  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| || || |||||  | ||||||||||| |||||| |     
T  34011750 aaatggtaaatctgaacgaaaaatacggtccattaacaatattattcgaactttattaattcacgcgtcattaccatcttcattttggcaccatgcttta 34011849  T
Q  494 gaaatggcaac 504  Q
    |||||||||||    
T  34011850 gaaatggcaac 34011860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 94 - 504
Target Start/End: Complemental strand, 4188153 - 4187745
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||||||||||||||| |||||| |||| ||||| || ||||||||| | ||||| |||||||||||||| || |||||| |||| ||||||||||||    
T  4188153 atttgatattttacatagtgatgtacggacctctccagttttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttg 4188054  T
Q  194 tggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattc 293  Q
    ||||| ||||  || ||||| ||||| ||||| ||  |    ||| |||||||  | ||  |||| ||||||||||||||||  ||||||||||| ||||    
T  4188053 tggacttttccaatgtcacataaatcccaagtttatccaatatttgaaaaactaagagcacacatcaacacacaatttcaaagagaaattaaaacaattc 4187954  T
Q  294 agtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctca 393  Q
    | |||||||||||  ||||  |||| ||||  ||||||| |||| | |||||| | |||||||||  |||| |||||||||| || || |||||||||||    
T  4187953 aatgtgacaatggcggtga--atgtcaatagtaattttcaaaaaatgtgtgaagctaatggaattgtttttcgtttgtcttgtccttacacatcttctca 4187856  T
Q  394 aaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctc 493  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||| || || |||||  | ||||||||||| |||||| |     
T  4187855 aaatggtaaatctgaacgaaaaatacggtccactaacaatattattcgaactttattaattcacgcgtcattaccatcttcattttggcaccatgcttta 4187756  T
Q  494 gaaatggcaac 504  Q
    |||||||||||    
T  4187755 gaaatggcaac 4187745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 95 - 501
Target Start/End: Original strand, 33284976 - 33285382
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||| ||||||| |||||||||||||||||  | ||||| ||   |||||| |||||||||||| | ||||||||| | || || ||||||||||    
T  33284976 tttgatattctacatagtgatgtatggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgt 33285075  T
Q  195 ggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattca 294  Q
    ||||||| | ||||||||| ||||||||||| ||  ||   ||||||||| | || |||||||| || ||||||||||||  ||| || ||||| ||| |    
T  33285076 ggacattccccatttcacataaatctcaagtttatcctatttttcaaaaattgcgagcttacatcaaaacacaatttcaacgggatatcaaaacaattta 33285175  T
Q  295 gtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctcaa 394  Q
    |||||| |||||| | || |||||   ||| |||||||||||  | ||||||   |||||||||   ||| || | || || || ||||| ||| |||||    
T  33285176 gtgtgataatggtggagaatatgtttctaataattttcgaaatatgtgtgaacttaatggaatttcctttcgtctctcatgtccttatacctctcctcaa 33285275  T
Q  395 aatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctcg 494  Q
    ||||| ||| |||| ||||||||||| |||||||| || |||||||||||||| ||| ||||||||||  ||||  |||||||||||||  ||||| | |    
T  33285276 aatggtaaagctgagcgaaaaatacgatccattaataacattattcgaactttattaattcatgcatccctacctccatcattttggcaatatgctttag 33285375  T
Q  495 aaatggc 501  Q
    |||||||    
T  33285376 aaatggc 33285382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 48101939 - 48101833
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    |||||||||||||| || ||| ||||||| || ||| | |||||| | |  ||||||   ||||||||| | |||||||||||||| ||  |||||||||    
T  48101939 tttgatattttacacagtgatttatggacttcaccgattttaagtacctctggtcatcggtattatgttttatttttggatgattattctgattttttgt 48101840  T
Q  195 ggacatt 201  Q
    |||||||    
T  48101839 ggacatt 48101833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 94 - 504
Target Start/End: Complemental strand, 38616648 - 38616238
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||||||||||||||| ||||||||||| ||||  || ||||||||| | ||||| |||||||||||||| || |||||| |||| ||||||||||||    
T  38616648 atttgatattttacatagtgatgtatggacctctcgtgttttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttg 38616549  T
Q  194 tggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattc 293  Q
    ||||| ||||  || ||||| ||||| ||||| ||  |    ||| |||||||  | ||  |||| ||||||||||||||||  ||||||||||| ||||    
T  38616548 tggacttttccaatgtcacataaatcccaagtttatccaatttttgaaaaactaagagcacacatcaacacacaatttcaaagagaaattaaaacaattc 38616449  T
Q  294 agtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctca 393  Q
    | ||||| || ||  |||| ||||| ||||  |||||||||||| | |||||| | |||| ||||  |||| |||| ||||| || || |||||||||||    
T  38616448 aatgtgataacggcggtgaatatgtcaatagaaattttcgaaaaatgtgtgaagctaatgaaattgtttttcgtttttcttgtccttacacatcttctca 38616349  T
Q  394 aaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctc 493  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| || || |||||  | ||||||||||| |||||| |     
T  38616348 aaatggtaaatctgaacgaaaaatacggtccattaacaatattattcaaactttattaattcacgcgtcattaccatcttcattttggcaccatgcttta 38616249  T
Q  494 gaaatggcaac 504  Q
    |||||||||||    
T  38616248 gaaatggcaac 38616238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 44354877 - 44354746
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||||||||| ||||| ||||||||||| ||||| ||  | || || || ||||| |||||||||| ||| ||| |||||||| |||||||||||||     
T  44354877 atttgatattttgcatagtgatgtatggacttctcccgttatgagctctttgggtcacaaatattatgctctttttctggatgatcactcaaatttttta 44354778  T
Q  194 tggacatttctcatttcacaaaaatctcaagt 225  Q
    ||||||||||  |||||| | |||||| ||||    
T  44354777 tggacatttccgatttcaaacaaatcttaagt 44354746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 504
Target Start/End: Original strand, 36038695 - 36039105
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    ||||||||| |||||||| ||||||||||||||||| || || |||   |  ||||||||||||||||| || | ||||||||| || |||||||| |||    
T  36038695 atttgatatattacatagtgatgtatggacatctcccgtattgagtatttccggtcataaatattatgtgctctatttggatgactattcaaatttcttg 36038794  T
Q  194 tggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttc-gtgcttacataaacacacaatttcaaaaggaaattaaaaccatt 292  Q
    ||||| || |  |||||||||||||  ||||| |  ||   ||||  |||| ||  | || || || || || ||||||||   |||| ||||||  |||    
T  36038795 tggactttcccaatttcacaaaaattgcaagtttt-tccaacttttgaaaatttaagagcatatattaaaactcaatttcatggggaagttaaaattatt 36038893  T
Q  293 cagtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctc 392  Q
    |||||||| |||||| | || ||||| |||     |||||  ||| | |||||| | |||||||||   ||| |||| || || || ||||| |||||||    
T  36038894 cagtgtgataatggtagagaatatgtcaatggtccttttcagaaactctgtgaagcaaatggaatttcatttcgtttctcgtgtccttatacttcttctc 36038993  T
Q  393 aaaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctct 492  Q
    ||||||| ||| ||||||||||||| ||||| ||||| ||||| ||||| |||||  |  ||||||| || |||||  ||   |||||||| ||||||||    
T  36038994 aaaatggcaaagctgaacgaaaaatccgttctattaataatataattcggactttactcattcatgcttctttaccgccaaatttttggcaccatgctct 36039093  T
Q  493 cgaaatggcaac 504  Q
      ||||||||||    
T  36039094 acaaatggcaac 36039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 95 - 501
Target Start/End: Complemental strand, 33518 - 33112
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||| ||||||| ||||||||| |||||||  | ||||| ||   |||||| |||||||||||| | ||||||||| | |  || ||||||||||    
T  33518 tttgatattctacatagtgatgtatggccatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactgttctaattttttgt 33419  T
Q  195 ggacatttctcatttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaatttcaaaaggaaattaaaaccattca 294  Q
    ||||||| | ||||||||| ||||||||||| ||  ||   ||||||||||| || |||||||| || ||||||||||||  ||| || ||||| |||||    
T  33418 ggacattccccatttcacataaatctcaagtttatcctatttttcaaaaactgcgagcttacatcaaaacacaatttcaacgggatatcaaaacaattca 33319  T
Q  295 gtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgcccatatacatcttctcaa 394  Q
    |||||| ||| || | || |||||   ||| |||||||||||  | ||||||   |||||||||   ||| || | || || || ||||| ||| |||||    
T  33318 gtgtgataattgtggagaatatgtctctaataattttcgaaatatgtgtgaacttaatggaatttcctttcgtctctcatggccttatacctctcctcaa 33219  T
Q  395 aatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctcg 494  Q
    ||||| |||  ||| ||||||||||| |||||||| || |||||||||||||| ||| ||||||||||  ||||  |||||||||||||  ||||| | |    
T  33218 aatggtaaagttgagcgaaaaatacgatccattaataacattattcgaactttattaattcatgcatccctacctccatcattttggcaatatgctttag 33119  T
Q  495 aaatggc 501  Q
    |||||||    
T  33118 aaatggc 33112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 8398185 - 8398276
Alignment:
Q  410 cgaaaaatacgttccattaacaatattattcgaactttgttacttcatgcatcgttacccacatcattttggcatcatgctctcgaaatggc 501  Q
    ||||||||||| |||||||| || |||||||||||||| ||| |||||||||   ||||  |||||||||||||  ||||||| ||||||||    
T  8398185 cgaaaaatacgatccattaataacattattcgaactttattaattcatgcattcctacctccatcattttggcaatatgctctagaaatggc 8398276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 7082488 - 7082597
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||| ||| | ||||| ||| | ||||||||||| || || ||||| |  || |||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  7082488 atttgacattatccatagtgatatttggacatctcctgttttgagttcttcgggccatagatattatgttttgtttgtggatgactactctaattttttg 7082587  T
Q  194 tggacatttc 203  Q
    ||||||||||    
T  7082588 tggacatttc 7082597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 16090255 - 16090386
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    ||||||||| |||||||| ||||||||||||||||| || || ||  | |   |||||||||||||||| || | ||||||||| || || ||||| |||    
T  16090255 atttgatatattacatagtgatgtatggacatctcccgtattgagcacttccagtcataaatattatgtgctctatttggatgactattcgaatttcttg 16090354  T
Q  194 tggacatttctcatttcacaaaaatctcaagt 225  Q
    ||||| || |  |||||||||||||| |||||    
T  16090355 tggactttcccaatttcacaaaaatcgcaagt 16090386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 447
Target Start/End: Complemental strand, 7326661 - 7326491
Alignment:
Q  277 ggaaattaaaaccattcagtgtgacaatggttgtgagtatgtaaataacaattttcgaaaattatgtgaaaccaatggaattcatttttgtttgtcttgc 376  Q
    |||| ||||||  ||||||||||| |||||| | || ||||| |||  |||||||| |||| | |||||| | |||||||||   ||| | || || ||     
T  7326661 ggaagttaaaaatattcagtgtgataatggtagagaatatgtcaatggcaattttcaaaaactctgtgaagcaaatggaatttcatttcgcttctcgtgt 7326562  T
Q  377 ccatatacatcttctcaaaatggaaaatctgaacgaaaaatacgttccattaacaatattattcgaacttt 447  Q
    ||  |||| || ||||||||||| ||| ||||||||||||| || |||||||| ||||| ||||| |||||    
T  7326561 cctcatacttcatctcaaaatggcaaagctgaacgaaaaatccgatccattaataatataattcggacttt 7326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 45032365 - 45032473
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||||||||||| ||  | ||||| ||||| || ||||||||    || ||||||||||||||||| ||||| || || | | ||||||| ||||    
T  45032365 tttgatattttacatagtgacttgtggacttctcctgttttaagttctgctggccataaatattatgttctatttttagacgacttcacaaatttcttgt 45032464  T
Q  195 ggacatttc 203  Q
    |||| ||||    
T  45032465 ggacctttc 45032473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 20221 - 20330
Alignment:
Q  94 atttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttg 193  Q
    |||||| ||| | ||||| ||| | ||||||||||| || || ||||| |  || |||| |||||||||| ||||| ||||||| ||||| |||||||||    
T  20221 atttgacattatccatagtgatatttggacatctcctgttttgagttcttcgggccatagatattatgttttgtttgtggatgactactctaattttttg 20320  T
Q  194 tggacatttc 203  Q
    ||||||||||    
T  20321 tggacatttc 20330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 36322 - 36430
Alignment:
Q  95 tttgatattttacatagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgt 194  Q
    ||||||||||||||||| ||| | ||||| |||||  | ||||||||    ||||||||||||||||| || ||||| ||||||||  ||||||| ||||    
T  36322 tttgatattttacatagtgatttgtggacgtctccaattttaagttctgctggtcataaatattatgtcctatttttagatgattatacaaatttcttgt 36421  T
Q  195 ggacatttc 203  Q
    |||| ||||    
T  36422 ggacttttc 36430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 25040572 - 25040734
Alignment:
Q  108 atagcgatgtatggacatctccggtcttaagttcattaggtcataaatattatgttctgtttttggatgattactcaaattttttgtggacatttctcat 207  Q
    |||| |||||||||||||||||  | ||||| ||   | |||| |||||||||||| |  | |||||| | || || ||||||||||||||||||| |||    
T  25040572 atagtgatgtatggacatctcccattttaagctcgacatgtcacaaatattatgttttactcttggataactattctaattttttgtggacatttcccat 25040671  T
Q  208 ttcacaaaaatctcaagtatactcttgctttcaaaaacttcgtgcttacataaacacacaattt 271  Q
    ||||| | |||||||||| ||   |   ||||||||||| || |||||||| || |||||||||    
T  25040672 ttcac-ataatctcaagtttatcatatttttcaaaaactgcgagcttacatcaaaacacaattt 25040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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