View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_1 (Length: 804)

Name: NF0818_low_1
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_1
NF0818_low_1
[»] chr6 (2 HSPs)
chr6 (180-420)||(636721-636961)
chr6 (2-170)||(636495-636663)
[»] chr8 (6 HSPs)
chr8 (166-354)||(44453814-44454008)
chr8 (59-169)||(44454043-44454153)
chr8 (121-170)||(44472250-44472299)
chr8 (280-354)||(44464507-44464581)
chr8 (59-164)||(7518407-7518512)
chr8 (280-354)||(44472038-44472112)
[»] chr1 (2 HSPs)
chr1 (59-160)||(11574720-11574821)
chr1 (246-350)||(11574493-11574604)
[»] chr5 (2 HSPs)
chr5 (582-644)||(22069893-22069955)
chr5 (404-449)||(39953788-39953833)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 180 - 420
Target Start/End: Original strand, 636721 - 636961
Alignment:
Q  180 agtgccctttaactggtacttttagacagaaactacccttcaaaatagaaaaatataaggcaatacatacctcttgccgagcaagcttgagttaagcctg 279  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  636721 agtgccctttaaccagtacttttagacagaaactacccttcaaaatagaaaaatataaggcaatacatacctcttgccgagcaagcttgagttaagcctg 636820  T
Q  280 gctagaatggcttctataggaggcatttcatcatccttctgagcaatatggattctccgaagagtggcttcagctagaatggcttctataggaagtagtt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  636821 gctagaatggcttctataggaggcatttcatcatccttctgagcagcatggactcttcgaagagtggcttcagctagaatggcttctataggaagtagtt 636920  T
Q  380 gtgatttgaagtaagaaaacgaacgttatagaaacaattca 420  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  636921 gtgatttgaagtaagaaaacgaacgttatagaaacaattca 636961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 636495 - 636663
Alignment:
Q  2 ggttaaatgattgaaaacacacccaagcaactaaacttacacaattacaagcttatgcaaggtaacctgaacagtcctctcagcttcaagaagtgcttct 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  636495 ggttaaatgattgaaatcacacccaagcaactaaacttacacaattacaagcttatgcaaggcaacctgaacagtcctctcagcttcaagaagtgcttct 636594  T
Q  102 tctttggattttgcaagacgatccaaagctctgttatcatcttgaagtttagcaatctgcaagaaacaa 170  Q
    | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  636595 tatttggattttgtaagacgatctaaagctctgttatcatcttgaagtttagcaatctgcaagaaacaa 636663  T

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Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 166 - 354
Target Start/End: Complemental strand, 44454008 - 44453814
Alignment:
Q  166 aacaagccaccctcagtgccctttaactggtacttttagacagaaactacccttcaaaatagaaaaatataaggcaatacatacctcttgccgagcaagc 265  Q
    ||||||||| |||||||||||||||||  ||| ||| | |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  44454008 aacaagccaacctcagtgccctttaaccagtattttcacacagaaactaccattcaaaatagaaaaa-ataaggcaataaatacctcttgccgagcaagc 44453910  T
Q  266 ttgagttaagcct-------ggctagaatggcttctataggaggcatttcatcatccttctgagcaatatggattctccgaagagtggcttcagct 354  Q
    ||||||| |||||        |||||||||||||||||||||||||| ||||||||||||||||||  |||||  || |||||||| |||||||||    
T  44453909 ttgagttcagcctctaaaggagctagaatggcttctataggaggcatgtcatcatccttctgagcagcatggacccttcgaagagtagcttcagct 44453814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 44454153 - 44454043
Alignment:
Q  59 caaggtaacctgaacagtcctctcagcttcaagaagtgcttcttctttggattttgcaagacgatccaaagctctgttatcatcttgaagtttagcaatc 158  Q
    ||||| |||||||||| |||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||    
T  44454153 caaggcaacctgaacactcctctcaacttcaagaagtgctgcttctttggatttcgtaagacgatccaaagctctgttatcatcttgaagtttagctatc 44454054  T
Q  159 tgcaagaaaca 169  Q
    |||||||||||    
T  44454053 tgcaagaaaca 44454043  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 44472299 - 44472250
Alignment:
Q  121 gatccaaagctctgttatcatcttgaagtttagcaatctgcaagaaacaa 170  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  44472299 gatccaaagctctgttatcatcttgaagtttagcaatttgaaagaaacaa 44472250  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 44464581 - 44464507
Alignment:
Q  280 gctagaatggcttctataggaggcatttcatcatccttctgagcaatatggattctccgaagagtggcttcagct 354  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||  |||||  || |||||||| |||||||||    
T  44464581 gctagaatggcctctataggaggcatgtcatcatccttttgagcagcatggacccttcgaagagtagcttcagct 44464507  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 7518512 - 7518407
Alignment:
Q  59 caaggtaacctgaacagtcctctcagcttcaagaagtgcttcttctttggattttgcaagacgatccaaagctctgttatcatcttgaagtttagcaatc 158  Q
    ||||| ||||||||||||| | || |||||||  |||||  ||||||||||||| | |||||| || || ||| ||||||| ||||| | ||||||||||    
T  7518512 caaggcaacctgaacagtcttttcggcttcaattagtgccgcttctttggatttggtaagacggtctaaggctttgttatcgtcttgtaatttagcaatc 7518413  T
Q  159 tgcaag 164  Q
    ||||||    
T  7518412 tgcaag 7518407  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 44472112 - 44472038
Alignment:
Q  280 gctagaatggcttctataggaggcatttcatcatccttctgagcaatatggattctccgaagagtggcttcagct 354  Q
    ||||||||||  |||||||||||||| ||||||||||| ||||||  |||||  || |||||||| |||||||||    
T  44472112 gctagaatggactctataggaggcatgtcatcatccttttgagcagcatggacccttcgaagagtagcttcagct 44472038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 11574821 - 11574720
Alignment:
Q  59 caaggtaacctgaacagtcctctcagcttcaagaagtgcttcttctttggattttgcaagacgatccaaagctctgttatcatcttgaagtttagcaatc 158  Q
    ||||| || |||||||||| | ||||||||||| |||||  ||||||||||||| | ||||||||| ||||||||||| |||||||| ||||||||||||    
T  11574821 caaggcaaactgaacagtcttttcagcttcaagtagtgcagcttctttggatttggtaagacgatctaaagctctgttgtcatcttgtagtttagcaatc 11574722  T
Q  159 tg 160  Q
    ||    
T  11574721 tg 11574720  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 11574604 - 11574493
Alignment:
Q  246 atacctcttgccgagcaagcttgagttaagcctg-------gctagaatggcttctataggaggcatttcatcatccttctgagcaatatggattctccg 338  Q
    |||||||||||||||||||||| |||| |||||        || ||||| ||||| || |||||||| ||||||||||||||||||  |||||  |||||    
T  11574604 atacctcttgccgagcaagctttagttcagcctccaaaggagcaagaattgcttcgatcggaggcatgtcatcatccttctgagcagcatggaccctccg 11574505  T
Q  339 aagagtggcttc 350  Q
    |||||| |||||    
T  11574504 aagagtagcttc 11574493  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 644
Target Start/End: Original strand, 22069893 - 22069955
Alignment:
Q  582 agtaaaaatggaagttgaatgaagttctgcgattgagagtgatagacgagggtgaaattaaca 644  Q
    ||||||||||  |||||| |||| ||||||||||||| ||||||| ||||| |||||| ||||    
T  22069893 agtaaaaatgtgagttgattgaatttctgcgattgagggtgataggcgaggatgaaatgaaca 22069955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 39953833 - 39953788
Alignment:
Q  404 gttatagaaacaattcacatgtgacgagtgagtgtaaaccttcttc 449  Q
    |||||||||||||||||| ||||| ||||||||| |||| ||||||    
T  39953833 gttatagaaacaattcacctgtgatgagtgagtgcaaactttcttc 39953788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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