View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_10 (Length: 586)
Name: NF0818_low_10
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 9e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 2 - 303
Target Start/End: Original strand, 29564180 - 29564490
Alignment:
| Q |
2 |
gaggaggagcagagattttgaaatgacaataataacaacaacgttagacactgtgcnnnnnnngtgactgttatttatttcccaacgtcgagcactgcct |
101 |
Q |
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| T |
29564180 |
gaggaagaacagagattttgaaatgacaataataacaacaacgttagacactgtgctttttgtgtgactgttatttatttcccaacgtcgagcactgcct |
29564279 |
T |
|
| Q |
102 |
cttcatgggaatttgaaaaagacttgtctggnnnnnnnnnnnnnnnnnnnnnnnacccaatatgccattcattggtcaaccataaattat-attttaaat |
200 |
Q |
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| T |
29564280 |
cttcatgggaatttgaaaaagacttgtctggtttttgtttttgtttgtctttttacccaatatgccattcattggtcaaccataaattattattttaaat |
29564379 |
T |
|
| Q |
201 |
ttagttaat---cattttcactttatttcattctattttggtttacacttagttctac-----attattattactccctctgtctcatatttttccaatt |
292 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
29564380 |
ttagttaataatcattttcactttatttcattctattttggtttacacttagttgtacattatattattattactccctctgtctcatatatttccaatt |
29564479 |
T |
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| Q |
293 |
aatgtgttgaa |
303 |
Q |
| |
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||||||||||| |
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| T |
29564480 |
aatgtgttgaa |
29564490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 384 - 552
Target Start/End: Original strand, 29564597 - 29564771
Alignment:
| Q |
384 |
aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtcacccattaatcagtcagtg-tccgtgccgtttaaggcaaagcattt-----gag |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
29564597 |
aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtcacccattaatcagtcagtggtccgtgccgtttaaggcaaagcatttgatttgag |
29564696 |
T |
|
| Q |
478 |
attctttatcttcttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctt |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564697 |
attctttatcttcttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctt |
29564771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 29564500 - 29564537
Alignment:
| Q |
350 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29564500 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
29564537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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