View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_104 (Length: 225)
Name: NF0818_low_104
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38543970 - 38544189
Alignment:
| Q |
1 |
gcttggaaaatatttaggaatcaaagataaatgtaaacatgaaaattggtgagactatcattgcgtatacgttagatacattagggaataagcatcctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38543970 |
gcttggaaaatatttaggaatcaaagataaatgtaaacatgaaaattggcgagactatcattgcgtatacgttagatacattagggaataagca-cctaa |
38544068 |
T |
|
| Q |
101 |
gtcgtatatttcatgtgcttttttctctcagttacacgtgatatcacacatcccatatgactgaaaatagtgatcgccgggtctatgtatgtattatcat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38544069 |
gtcgtatatttcatgtgcttttttctctcaattatacgtgatgtaacacatcccatatgtctgaaaatagtgatcgccgggtctatgtatgtattatcat |
38544168 |
T |
|
| Q |
201 |
cggcttacatcgtagtcgtgg |
221 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
38544169 |
cggcttacgtcgtagtcgtgg |
38544189 |
T |
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