View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_106 (Length: 209)
Name: NF0818_low_106
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 28022900 - 28022705
Alignment:
| Q |
1 |
ccttatcggtctccttcaccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcaggtctgatggcagtggatcaacaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28022900 |
ccttatcggtctccttcaccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcaggtctgatggcagcggatcaacaat |
28022801 |
T |
|
| Q |
101 |
gagagtaactgtttctgtttcatctccgcacaaagcatagaatccaatccttttctcattatccaactctatacccttgtaccagagattttgcct |
196 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28022800 |
gagagtaactgtttctgtttcatctccgcgcaaagcatagaatccaatccttttctcattatccaactctatacccttgtaccagagattttgcct |
28022705 |
T |
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