View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_11 (Length: 540)
Name: NF0818_low_11
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 4318691 - 4319153
Alignment:
| Q |
9 |
gaagaatattagtacataaaattgcaaaagaaatcttgtgaccacaaaaattaattaagactttggtcaagtaagttggacttggacaaagtcatcacta |
108 |
Q |
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||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4318691 |
gaagattactagtacataaaattgcaaaacaaatcttgtgaccacaaaaattaattaagactttggtcaagtaagttggacttggacaaagtcatcacta |
4318790 |
T |
|
| Q |
109 |
ccatcaacctcctcttcaatccattgaacaacgttaacaccaaatgagcttgttccaccattgtcttccagccctggtttccttgcttctcctacgaccc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4318791 |
ccatcaacctcctcttcaatccattgaacaacgttaacaccaaatgagcttgttccaccattgtcttccagccctggtttccttgcttctcctacgaccc |
4318890 |
T |
|
| Q |
209 |
gcatgatttcttccacactttgttggcttggtaattggtctatctgtatatcattgtaaccttttctttgggcctcaactatctctctgggcatgttctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4318891 |
gcatgatttcttccacactttgttggcttggtaattggtctatctgtatatcattgtaaccttttctttgagcctcaactatctctctgggcatgttctt |
4318990 |
T |
|
| Q |
309 |
cccaaaccaagggtgttgtcttatctctgagattgtgatcctctttaaaaaagaaggcaaaaaacaaataatagttagtttcattacacgtgaaatacat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4318991 |
cccaaaccaagggtgttgtcttatctctgagattgtgatcctctttaaaaaagaaggcaaaaaacaaataatagttagttttattacacgtgaaatacat |
4319090 |
T |
|
| Q |
409 |
gcacttagctacggtcttttaacatttcatttcatattcataagcttatctaaaaatctagct |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4319091 |
gcacttagctacggtcttttaacatttcatttcatattcataagcttatctaaaaatctagct |
4319153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 470 - 534
Target Start/End: Original strand, 35286055 - 35286119
Alignment:
| Q |
470 |
ctgttgcctctgctaccctcccctggggggtccttcattttctgttaatatttgagggaccctta |
534 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35286055 |
ctgttgcctctgctaccctcccctggggggtccttcattttctgttaatatttgagggaccctta |
35286119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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