View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_13 (Length: 522)
Name: NF0818_low_13
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 97 - 511
Target Start/End: Original strand, 17232668 - 17233090
Alignment:
| Q |
97 |
attatgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232668 |
attatgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatc |
17232767 |
T |
|
| Q |
197 |
ggatcaggcacagcgatgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232768 |
ggatcaggcacagcgatgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatat |
17232867 |
T |
|
| Q |
297 |
caaatcataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtt----nnnnnn |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232868 |
caaatcataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggaggg |
17232967 |
T |
|
| Q |
393 |
nttaca----cagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccg |
488 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17232968 |
ggtacactatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccg |
17233067 |
T |
|
| Q |
489 |
tgtccgacactcctatgctactc |
511 |
Q |
| |
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| T |
17233068 |
tgtccgacactcctatgatactc |
17233090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 112 - 338
Target Start/End: Original strand, 22768616 - 22768837
Alignment:
| Q |
112 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcacagcg |
211 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||| | ||| ||||||||||||| | |
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| T |
22768616 |
ttaccagatgattgcacactaacatgagagtatgaaccataagaaagggg-atcgcttccccatctggtacaaattgattgtattggatcaggcacagtg |
22768714 |
T |
|
| Q |
212 |
atgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaacca-tgtttttgaaacagtgaattatatcaaatcataagatt |
310 |
Q |
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||||| |||||||||||||| |||||| |||||||| | |||||||||||| |||||| ||||| |||||||||| | || || ||| ||| || |
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| T |
22768715 |
atgcctttaggttgaaaaatacctgtagaaaaatatat----aaattgaaaattagaaccacattttttttaacagtgaatcaaataaattcacaag-tt |
22768809 |
T |
|
| Q |
311 |
acgaataacaacttaatagcttgagata |
338 |
Q |
| |
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|
| T |
22768810 |
aagaataataacataatagcttgagata |
22768837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 112 - 311
Target Start/End: Original strand, 21646226 - 21646420
Alignment:
| Q |
112 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcacagcg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||||| | ||||||||||| | ||| |||||||||||| | |
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| T |
21646226 |
ttaccagatgattgcacactgacatgagagtatgaaccataagaaa-agggatcgcttccccatctcgtacaaattgattgtattggatcaggcacattg |
21646324 |
T |
|
| Q |
212 |
atgcccttaggttgaaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatatcaaatcataagatta |
311 |
Q |
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||||| |||||||||||||| |||| | ||| |||| | ||| ||| ||| ||||||| ||||| |||||||||||||||| || ||||||||||| |
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| T |
21646325 |
atgcctttaggttgaaaaatacctgcagaaagatatat----aaaatgataatcggaaccacattttttaaacagtgaattatattaattcataagatta |
21646420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 21624469 - 21624513
Alignment:
| Q |
112 |
ttaccagatgattgcacactaacatgagaatatgaaccataagaa |
156 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
21624469 |
ttaccagatgattgcacactgacatgagagtatgaaccataagaa |
21624513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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