View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_15 (Length: 506)

Name: NF0818_low_15
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_15
NF0818_low_15
[»] chr4 (3 HSPs)
chr4 (335-477)||(30223264-30223406)
chr4 (212-335)||(30224292-30224415)
chr4 (11-88)||(30224518-30224595)
[»] chr7 (1 HSPs)
chr7 (398-477)||(41941600-41941679)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 335 - 477
Target Start/End: Complemental strand, 30223406 - 30223264
Alignment:
Q  335 ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30223406 ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat 30223307  T
Q  435 gaacagtggtgcttaactgtattgaaatgcctctgttagttgg 477  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30223306 gaacagtggtgcttaactgtattgaaatgcctctgttagttgg 30223264  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 30224415 - 30224292
Alignment:
Q  212 cagtaacaataataattagagcatgtcttaaaaagtttaataataataataatttcaaaccttacatatcaaaaccgcatattgtctcctatttaaattg 311  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30224415 cagtaacaataataattagagcatgtcttaaaaaatttaataataataataatttcaaaccttaaatatcaaaaccgcatattgtctcctatttaaattg 30224316  T
Q  312 tttgctcctttacaaaattgtagc 335  Q
    ||||||||||||||||||||||||    
T  30224315 tttgctcctttacaaaattgtagc 30224292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 30224595 - 30224518
Alignment:
Q  11 cataggctacactcatagactacataaaatattttttaatactgtgtagtctacaaacaatatttgtaagtaaatggt 88  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30224595 cataggctacactcatagactacataaaatattttttaacactgtgtagtctacaaacaatatttgtaagtaaatggt 30224518  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 41941600 - 41941679
Alignment:
Q  398 gtcctaaagattcctttgtacaaggtaatttgttcatgaacagtggtgcttaactgtattgaaatgcctctgttagttgg 477  Q
    ||||||||||||||| | ||||||||||||| | | ||||| ||||| ||| |||||||| |||||||||||||||||||    
T  41941600 gtcctaaagattcctctatacaaggtaatttatccgtgaactgtggtacttcactgtatttaaatgcctctgttagttgg 41941679  T

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