View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_16 (Length: 503)
Name: NF0818_low_16
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 92 - 428
Target Start/End: Original strand, 34703429 - 34703761
Alignment:
| Q |
92 |
cttaatattaggagtaattggcaactactttgatgataagtttctgaaacctcgctttgtcttctaacctaaaatcaataacaagatatgcaaattactc |
191 |
Q |
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| T |
34703429 |
cttaatattaggagtaattggcaactactttgatgataagtatctgaaacctcactttgtcttctaacctaaaatcaataacaagatatgcaaattactc |
34703528 |
T |
|
| Q |
192 |
cgtccatcccataatgcaagaccttttcaaaaggtaaatgccaacgagtgcctcgagagacttttaaaagcacttaaagtggtatttgttacattggaaa |
291 |
Q |
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| T |
34703529 |
cgtccatcccataatgtaagaccttttcaaaaagtaaatgccaacgagtgcctcgagaga-ttttttaagcacttaaagtggtatttgttgcattagaaa |
34703627 |
T |
|
| Q |
292 |
ttgaaatctttgannnnnnnnnnnnaaagaatgtaccatagagtaattttttctcttctttctcattttccattgcatatagtacgttctttaaatcacc |
391 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34703628 |
ttgaaatctttga---tttttttttaaagaatgtactatagagtaattttttctcttctttctcatttcccattgcatatagtacgttctttaaatcacc |
34703724 |
T |
|
| Q |
392 |
cccatagtacaatcatccttgtgtataactttaacat |
428 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
34703725 |
cccataatacaatcatccttgtgtataactttaacat |
34703761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 34710586 - 34710648
Alignment:
| Q |
428 |
ttatgccaaaatctcctaacttgatgtgtgattttatgcaatattgtaaagtgtcatcgagta |
490 |
Q |
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| T |
34710586 |
ttatgccaaaatctcctaatttgatgtgtaattttatgcaatattgtaaagtgtcatcgagta |
34710648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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