View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_22 (Length: 471)
Name: NF0818_low_22
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 74 - 466
Target Start/End: Complemental strand, 29335496 - 29335104
Alignment:
| Q |
74 |
aatttcaacaacaatgacttggttgctcgagattcaacaggaatctcattctcaagcaccagcgagagcagcaatgaacttaccatccaaagagttttct |
173 |
Q |
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| T |
29335496 |
aatttcaacaacaatgacttggttgttcgagattcaacaggaatctcattctcaagcaccagtgagagcagcaatgaacttaccatccaaagagttttct |
29335397 |
T |
|
| Q |
174 |
cttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcacacaagagagaaagaacattagcaaagcgagctatgcg |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335396 |
cttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcacacaagagagaaagaacattagcaaagcgagctatgcg |
29335297 |
T |
|
| Q |
274 |
aattggactattcactgagaggtatgcatgtcttgcatctctgcctctcaatggttctttcagggcattaggtataaagacacactcttcactacaccat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335296 |
aattggactattcactgagaggtatgcatgtcttgcatctctgcctctcaatggttctttcagggcattaggtataaagacacactcttcactacaccat |
29335197 |
T |
|
| Q |
374 |
ggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatgtaagattcaaacaaggatctatcggtcatccgatattcttggag |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335196 |
ggtttttcgccgccaacaataaggcctagtcctgagataaaaagcaatgtaagattcaaacaaggatctatcggtcatccgatattcttggag |
29335104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 400
Target Start/End: Complemental strand, 33032647 - 33032407
Alignment:
| Q |
163 |
aagagttttctcttgcaattactgtcggcgcaaattttacagctctcaggcacttggtggtcatcaaaatgcacacaagagagaaagaacattagcaaag |
262 |
Q |
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|||||||||||| ||||||||||||| | | || |||| ||| ||||| || |||||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
33032647 |
aagagttttctcatgcaattactgtcagagaaagtttttcagttctcaagctcttggtggacaccaaaatgcacataaaagagaaagaacattagcaaaa |
33032548 |
T |
|
| Q |
263 |
cgagctatgcgaattggactattcactgagaggt---atgcatgtcttgcatctctgcctctcaatggttctttcagggcattaggtataaagacacact |
359 |
Q |
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|||||||| |||| ||| | || |||| |||| |||| || | |||||| | ||| | |||||||||| ||| ||||||| ||||| |||||| |
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| T |
33032547 |
agagctatgagaatgggaatgttttctgataggtataatgctagtttagcatctttacctttgcatggttcttttaggtcattagggataaaagcacact |
33032448 |
T |
|
| Q |
360 |
cttcactacaccatggtttttcgccgccaacaataaggcct |
400 |
Q |
| |
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||||| | ||| ||||||| || || ||||||| |||||| |
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| T |
33032447 |
cttcaatgcactatggtttctcaccaacaacaattaggcct |
33032407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 45217916 - 45217873
Alignment:
| Q |
209 |
caggcacttggtggtcatcaaaatgcacacaagagagaaagaac |
252 |
Q |
| |
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|||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
45217916 |
caggcacttggtggacaccaaaatgcacacaaaagagaaagaac |
45217873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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