View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_23 (Length: 471)
Name: NF0818_low_23
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_23 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 98 - 463
Target Start/End: Original strand, 1044381 - 1044746
Alignment:
| Q |
98 |
gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044381 |
gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag |
1044480 |
T |
|
| Q |
198 |
atttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaaga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044481 |
atttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaaga |
1044580 |
T |
|
| Q |
298 |
aaacaatgttgtattgcagcatccaagggtggacctccatattaataagttgtttttcttcttatacattggttttgcagtgaatttggtcacttaatta |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044581 |
aaacaatgttgtattgcagcatccaagggtggacctccatattaataagttgtttttcttcttatacattggttttgcagtgaatttggtcacttaatta |
1044680 |
T |
|
| Q |
398 |
agaattttgttaattatagacatagttatattttttattcattcttctcatactagcttctctgct |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044681 |
agaattttgttaattatagacatagttatattttttattcattcttctcatactagcttctctgct |
1044746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 100 - 330
Target Start/End: Original strand, 1033996 - 1034226
Alignment:
| Q |
100 |
tatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagat |
199 |
Q |
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|||||||||||||| |||||| |||||||||| || || | |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1033996 |
tatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagat |
1034095 |
T |
|
| Q |
200 |
ttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaa |
299 |
Q |
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||||||| || ||||||||||| || ||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
1034096 |
ttgcactaaacgctcctctcaataaatataacagggagacattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaa |
1034195 |
T |
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| Q |
300 |
acaatgttgtattgcagcatccaagggtgga |
330 |
Q |
| |
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|||||||||||||| ||||||||||| |||| |
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| T |
1034196 |
acaatgttgtattgtagcatccaaggttgga |
1034226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 115 - 299
Target Start/End: Original strand, 1066013 - 1066197
Alignment:
| Q |
115 |
gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc |
214 |
Q |
| |
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|||||| |||| ||||||||||||| |||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |
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| T |
1066013 |
gggatcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctc |
1066112 |
T |
|
| Q |
215 |
ctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaa |
299 |
Q |
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|||| ||||| ||||| |||||||| ||||||||||||||||| ||| | ||||| |||||||| |||||||||||||||||||| |
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| T |
1066113 |
ctctgaacaaatataacagggagacgttctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaa |
1066197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 98 - 292
Target Start/End: Original strand, 1053639 - 1053833
Alignment:
| Q |
98 |
gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag |
197 |
Q |
| |
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||||||| |||||||| || ||| |||||||||||||||| | |||||||||| | | |||||||||||||||| || | ||||||||||| |||||||| |
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| T |
1053639 |
gctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagag |
1053738 |
T |
|
| Q |
198 |
atttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaat |
292 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| | ||||| |||||||| || | |||||||| |
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| T |
1053739 |
atttgcacttaatgctcctcttaacaagtataatagggagacattctacacttctgatccagttataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 1071740 - 1071921
Alignment:
| Q |
115 |
gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc |
214 |
Q |
| |
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|||||| |||| ||||||||||||| |||||| || || || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
1071740 |
gggatcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctc |
1071839 |
T |
|
| Q |
215 |
ctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaag |
296 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||| |||||||||| ||| | ||||| |||||||| || |||||||||||||| |
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| T |
1071840 |
ctctaaacaagtataacagggagacattttacgtttctgatccagttctaggttatactgactacccttttcttgaatgaag |
1071921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 310
Target Start/End: Original strand, 1058921 - 1059116
Alignment:
| Q |
115 |
gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc |
214 |
Q |
| |
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|||||| |||| ||||||||||| | | |||| ||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
1058921 |
gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctc |
1059020 |
T |
|
| Q |
215 |
ctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgta |
310 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||| ||| ||||| ||| | ||||| |||||||| || ||||||||||||||||| || ||||||| |
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| T |
1059021 |
ctctaaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 1046966 - 1047164
Alignment:
| Q |
97 |
agctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaaga |
196 |
Q |
| |
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|||||||| |||| |||||||||| |||||||||||||||| | || ||||||||| | ||| | ||||| ||| |||| ||||||||||||||||||| |
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| T |
1046966 |
agctatgaaagactagacgggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaaga |
1047065 |
T |
|
| Q |
197 |
gatttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaa |
295 |
Q |
| |
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||||||||||||||||||| || ||||||||||||| ||||||||||| || ||||||||| ||| ||||||| || ||||| || ||||||||||||| |
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|
| T |
1047066 |
gatttgcacttaatgctcccctaaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaa |
1047164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 289
Target Start/End: Complemental strand, 1640553 - 1640371
Alignment:
| Q |
107 |
gacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcact |
206 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||| ||| |||||||||| | ||||||||| ||||| || | ||||||||||| ||||||||||| || || |
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|
| T |
1640553 |
gacaagatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgct |
1640454 |
T |
|
| Q |
207 |
taatgctcctctcaacaagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttg |
289 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||||||||||| | ||||| || ||||| || ||||||| |
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|
| T |
1640453 |
cgatgctcctctcaacaagtataaccgggaaacattctacacatctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 65855 - 65937
Alignment:
| Q |
122 |
atgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
204 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
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| T |
65855 |
atgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 12121403 - 12121338
Alignment:
| Q |
139 |
aaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca |
204 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
12121403 |
aaggcagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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