View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_27 (Length: 452)
Name: NF0818_low_27
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 240 - 441
Target Start/End: Complemental strand, 12794831 - 12794628
Alignment:
| Q |
240 |
cattatttttacctctaagccactagagcttctgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttggtcatt |
339 |
Q |
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| T |
12794831 |
cattatttttacctctaagccactagagcttttgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttgatcatt |
12794732 |
T |
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| Q |
340 |
gttggtgactttagcagatg-acttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagtgtcttcat-aaattatccatgattttcc |
437 |
Q |
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| T |
12794731 |
gttggtgactttagcagatgaacttggatgaaatttctgagaagcaaggatgtgtcttacgatgtgtttagtgtcttcataaaatcatccatgattttcc |
12794632 |
T |
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| Q |
438 |
tctc |
441 |
Q |
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|||| |
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| T |
12794631 |
tctc |
12794628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 12795041 - 12794871
Alignment:
| Q |
30 |
ttttactcggggaggtgggaaaagtgtggaaaaattgtgatgtttcaaaagtgatagtgtttttgtagcaattgaatttccatttgttatcctctagagt |
129 |
Q |
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| T |
12795041 |
ttttaatcggggaggtgggaaaagtgtggaaacgttgtgatgtttcaaaagtgatagtgtttttgtagcaattgaatttccatttgttatcctctagagt |
12794942 |
T |
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| Q |
130 |
gaacttcttcaatggtagtgtagtgtttgggggtatgagagtcgaatgaacgcttttttgcgaggtatgtc |
200 |
Q |
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| T |
12794941 |
gaacttcttcaatggtagtggagtgtttgggggtatgagagtcgaatgaacgcttttttgcgaggtatgtc |
12794871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 416
Target Start/End: Complemental strand, 7500712 - 7500545
Alignment:
| Q |
250 |
acctctaagccactagagcttctgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttggtcattgttggtgact |
349 |
Q |
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||||||| |||||||||||| ||||||||||| | |||| |||| || ||| ||| | ||||| | ||||||| |||| ||| ||||||||| ||||| |
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| T |
7500712 |
acctctagaccactagagcttttgcacattgatctttttgagccaattgatactgcctcaatcaatggaaagaaatatggattgatcattgttgatgact |
7500613 |
T |
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| Q |
350 |
ttagcagat-gacttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagtgtcttc |
416 |
Q |
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||| ||||| |||||| ||||||| | | || |||| ||| |||||| |||||||||||||||||| |
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| T |
7500612 |
ttaacagatggacttgagtgaaattcctcaaaagcaagaatgagtcttatgatgtgtttagtgtcttc |
7500545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 416
Target Start/End: Original strand, 10081092 - 10081192
Alignment:
| Q |
317 |
aaaagaaacatggtttggtcattgttggtgactttagcagat-gacttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagtgtctt |
415 |
Q |
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|||||||| |||| ||||||||||||| ||||||||||| || ||||| | ||||| | ||| || |||||||| |||||| ||||| |||||| |||| |
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| T |
10081092 |
aaaagaaatatggattggtcattgttgatgactttagcatatggactttgctgaaactattgaaaagcaaggatgagtcttatgatgtatttagtatctt |
10081191 |
T |
|
| Q |
416 |
c |
416 |
Q |
| |
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| |
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|
| T |
10081192 |
c |
10081192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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