View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_28 (Length: 446)

Name: NF0818_low_28
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_28
NF0818_low_28
[»] chr1 (5 HSPs)
chr1 (122-211)||(35285669-35285758)
chr1 (226-311)||(35285550-35285635)
chr1 (7-71)||(35286055-35286119)
chr1 (272-311)||(26127338-26127377)
chr1 (381-436)||(35285429-35285480)
[»] chr7 (3 HSPs)
chr7 (272-311)||(28359764-28359803)
chr7 (272-311)||(40417636-40417675)
chr7 (272-304)||(6221044-6221076)
[»] chr4 (4 HSPs)
chr4 (275-311)||(36619879-36619915)
chr4 (272-311)||(47742739-47742778)
chr4 (275-309)||(38575812-38575846)
chr4 (272-309)||(48743544-48743581)
[»] chr2 (3 HSPs)
chr2 (272-304)||(45716445-45716477)
chr2 (278-311)||(19511100-19511133)
chr2 (275-311)||(6599344-6599380)
[»] scaffold0007 (1 HSPs)
scaffold0007 (272-311)||(185445-185484)
[»] chr8 (2 HSPs)
chr8 (272-311)||(44362359-44362398)
chr8 (277-309)||(5323831-5323863)
[»] chr3 (1 HSPs)
chr3 (274-311)||(53653190-53653227)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 35285758 - 35285669
Alignment:
Q  122 ccatattacatacattaattagtaggtatattgattgctcattttcaattgaaagttttcgtattacatatttcctcccgtcacatttat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  35285758 ccatattacatacattaattagtaggtatattgattgctcattttcaattgaaagtcttcgtattacatatttcctccggtcacatttat 35285669  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 35285635 - 35285550
Alignment:
Q  226 ttaggtacattttaataataaatattgttaactggtactcccgggcaggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35285635 ttagatacattttaataatgaatattgttagctggtactcccggacaggaactaaaagtagaaagaaaagtcaaattttacattga 35285550  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 35286119 - 35286055
Alignment:
Q  7 taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacag 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35286119 taagggtccctcaaatattaacagaaaatgaaggaccccccaggggagggtagcagaggcaacag 35286055  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 26127377 - 26127338
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26127377 aggaactaaaagtagaaagaaaagtcaaattttacattga 26127338  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 35285480 - 35285429
Alignment:
Q  381 ccttaacccgtgatccgtagaagttcgttccctaatttatatcattctcttctctg 436  Q
    ||||||||||||| ||||||||||||    ||||||||||||||||||||||||||    
T  35285480 ccttaacccgtgacccgtagaagttc----cctaatttatatcattctcttctctg 35285429  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 28359803 - 28359764
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  28359803 aggaactaaaagtagaaagaaaagtcaaattttgcattga 28359764  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 40417636 - 40417675
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  40417636 aggaactaaatgtagaaagaaaagtcaaattttgcattga 40417675  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 6221044 - 6221076
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaatttt 304  Q
    ||||||||||||| |||||||||||||||||||    
T  6221044 aggaactaaaagtggaaagaaaagtcaaatttt 6221076  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 36619879 - 36619915
Alignment:
Q  275 aactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36619879 aactaaaaatagaaagaaaagtcaaattttacattga 36619915  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 47742739 - 47742778
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  47742739 aggaactaaaagtagaaagaaatgtcaaattttatattga 47742778  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 38575846 - 38575812
Alignment:
Q  275 aactaaaagtagaaagaaaagtcaaattttacatt 309  Q
    ||||||||||| |||||||||||||||||||||||    
T  38575846 aactaaaagtataaagaaaagtcaaattttacatt 38575812  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 48743581 - 48743544
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacatt 309  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  48743581 aggaactaaaagtagaaagaaaaatcaaattttgcatt 48743544  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 45716445 - 45716477
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaatttt 304  Q
    |||||||||||||||||||||||||||||||||    
T  45716445 aggaactaaaagtagaaagaaaagtcaaatttt 45716477  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 19511100 - 19511133
Alignment:
Q  278 taaaagtagaaagaaaagtcaaattttacattga 311  Q
    ||||||||||||||||| ||||||||||||||||    
T  19511100 taaaagtagaaagaaaaatcaaattttacattga 19511133  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 6599344 - 6599380
Alignment:
Q  275 aactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  6599344 aactaaaagtagaaagaaaagtcaagttttgcattga 6599380  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 185445 - 185484
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  185445 aggaactaaaagtagaaagaaaagttaaattttgcattga 185484  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 44362398 - 44362359
Alignment:
Q  272 aggaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  44362398 aggaactaaaagtagaaagaaatgtcaaattttgcattga 44362359  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 5323863 - 5323831
Alignment:
Q  277 ctaaaagtagaaagaaaagtcaaattttacatt 309  Q
    |||||| ||||||||||||||||||||||||||    
T  5323863 ctaaaattagaaagaaaagtcaaattttacatt 5323831  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 53653227 - 53653190
Alignment:
Q  274 gaactaaaagtagaaagaaaagtcaaattttacattga 311  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  53653227 gaactaaaagtagaaagaaaagtcaatttttatattga 53653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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