View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_3 (Length: 737)
Name: NF0818_low_3
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 564
Target Start/End: Complemental strand, 30621968 - 30621441
Alignment:
| Q |
31 |
accttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgcagtaaga |
130 |
Q |
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| T |
30621968 |
accttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgtagtaaga |
30621869 |
T |
|
| Q |
131 |
aggtgttcaataagctccataatnnnnnnnnnttcaaacgaacacttttaagcaattaatgatagtaagctaaataagctaattaatctcagccacgtat |
230 |
Q |
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| T |
30621868 |
aggtgttcaataagctccataataaaaaat--ttcaaatgaacacttttaagcaattagtgatagtaagctaaataagctaattaatctcagccacgtat |
30621771 |
T |
|
| Q |
231 |
gctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagacttgatgccagaccagtnnnnnnnnnnnggagaa |
330 |
Q |
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| T |
30621770 |
gctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagatttgatgccagaccagtaaaaaaaaataggagaa |
30621671 |
T |
|
| Q |
331 |
taagtagggaggcagaagcatattcttctcgaatatttgcacttgcagtaactgtaattttcctttgccaataaaatttcttcttttgcctatatatcat |
430 |
Q |
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| T |
30621670 |
taattagggaggcagaagcatattcttctcgaatatttgcactttcagtaactgtaattttcctttgccaatgaaattttttctttttcctatatatcat |
30621571 |
T |
|
| Q |
431 |
tttccactgcctttaannnnnnnnncactaaagccaaatcctttgattcatctttttctttctctctcttgtagttccaacgacttctgtgttaattatc |
530 |
Q |
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| T |
30621570 |
tttccactgcctttcatttttttttcactaaagccaatttcttttattcatctttttctttctctctcttgtagttcca---acttctgtgttaattatc |
30621474 |
T |
|
| Q |
531 |
tttcaggtaacaatcttgcattctcactttctac |
564 |
Q |
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| T |
30621473 |
-ttcaggtaacaatcttgcattctcactatctac |
30621441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 613 - 726
Target Start/End: Complemental strand, 30621405 - 30621291
Alignment:
| Q |
613 |
catcatgtgaccattacgtccctccaaatgcattatatatatatgttgtat---tctccatctcaacatcaacatgtattacatttaatattaatttgca |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30621405 |
catcatgtgaccattacgtccctccaaatgcattatatatat--gttgtataattctccatctcaacatcaacatgtattacatttaatattaatttgca |
30621308 |
T |
|
| Q |
710 |
ctgcatttctgtttcat |
726 |
Q |
| |
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|| |||||||||||||| |
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| T |
30621307 |
ctacatttctgtttcat |
30621291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 28044986 - 28045082
Alignment:
| Q |
34 |
ttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgcagtaagaa |
131 |
Q |
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| T |
28044986 |
ttctatatttacttttcaaatagaaaaagaatcaattaaatttaattgcattgaattttaaattaattca-tgaaatatgtttttggtgtggtaagaa |
28045082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 17542991 - 17543053
Alignment:
| Q |
35 |
tctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaattt |
97 |
Q |
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| T |
17542991 |
tctatattaacattttaaattgacaaagaatcaaatgaatttaattgcattgatgtttaattt |
17543053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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