View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_30 (Length: 444)
Name: NF0818_low_30
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 46294764 - 46294439
Alignment:
| Q |
13 |
aatatggaatagcactcacttggcaatcacctgcaccaacacgagcaaaaatgcaatcacgaacagatatgctcgctttgtcacatggaacaaagcaacc |
112 |
Q |
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| T |
46294764 |
aatatggaatagcactcacttggcaatcacctgcaccaacacgagcaaaaatgcaatcacgaacagatatgctcgctttgtcacatggaacaaagcaacc |
46294665 |
T |
|
| Q |
113 |
aacttgagccatcaaaatattcactcccacctacacaaaaaccattatgcaaatcaaatctctaagcccaaatagcaaggatgcaagtatctgaattgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46294664 |
aacttgagccatcaaaatattcactcccacctacacaaaaaccattatgcaaatcaaatctctaagcccaaatagcaaggatgcaagtatctgaattgta |
46294565 |
T |
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| Q |
213 |
tgtgtgaactaaaatatctatacaaagaaaggtgagacactccaatttgatggccatgtcatgattaacatcagcataaaagtagaaagacagtgtccaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46294564 |
tgtgtgaactaaaatatctatacaaagaaaggtgagacactccaatttgatggccatgtcatgcttaacatcagcataaaagtagaaagacagtgtccaa |
46294465 |
T |
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| Q |
313 |
aaattaattacaggacagataaccgt |
338 |
Q |
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| T |
46294464 |
aaattaattacaggacagataaccgt |
46294439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 35286055 - 35286119
Alignment:
| Q |
374 |
ctgttgcctctgctaccctcccctggggggtccttcgttttctgttaatatttgagggaccctta |
438 |
Q |
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| T |
35286055 |
ctgttgcctctgctaccctcccctggggggtccttcattttctgttaatatttgagggaccctta |
35286119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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