View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_36 (Length: 408)
Name: NF0818_low_36
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 40511244 - 40511473
Alignment:
| Q |
8 |
gagcagagagaaagctatgacagagatgaccaaggaagctctggtaccatttgaactcaatcccaaccatgtcatggtggcttcactgacttgt--gata |
105 |
Q |
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| T |
40511244 |
gagcaaagagaaagctatgacagagatgaccaaggaagctctggtcccatttgaactcaatcccaaccatgtcatggtggcttcactgatttgtgagata |
40511343 |
T |
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| Q |
106 |
agtaatgcacataaatcaacatctcataatacataatagtataatac---atatattacaacaaacaacatctatcagaaacttataatttactcttggt |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511344 |
agtaatgcacataaatcaacctctcataatacataatagtaaaatacataatatattacaacaaacaacatctatcagaaacttataatttactcttggt |
40511443 |
T |
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| Q |
203 |
acgtagagacttgtaacttatgaaatgggt |
232 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40511444 |
acgtagagacttgtaacttatgaaatgggt |
40511473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 40511604 - 40511682
Alignment:
| Q |
305 |
tggtgcggaaaacccaaaattactttcaatacctcctcaaacggcagttttcttaac-atttatttaggtcaagagtga |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40511604 |
tggtgcggaaaacccaaaattactttcaatacctcctcaaacggcagttttcttaacaatttatttaggtcaagagtga |
40511682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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