View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_39 (Length: 389)

Name: NF0818_low_39
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_39
NF0818_low_39
[»] chr4 (7 HSPs)
chr4 (226-379)||(47293489-47293642)
chr4 (96-228)||(47293673-47293824)
chr4 (268-385)||(45876737-45876854)
chr4 (248-385)||(55705908-55706045)
chr4 (259-379)||(54304257-54304377)
chr4 (279-384)||(45858817-45858922)
chr4 (256-385)||(56208520-56208649)
[»] chr5 (3 HSPs)
chr5 (268-385)||(35854569-35854686)
chr5 (248-389)||(10521324-10521465)
chr5 (336-385)||(35802504-35802553)
[»] chr8 (2 HSPs)
chr8 (249-386)||(7972058-7972195)
chr8 (255-379)||(7961694-7961818)
[»] chr2 (1 HSPs)
chr2 (279-379)||(24357488-24357588)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 226 - 379
Target Start/End: Complemental strand, 47293642 - 47293489
Alignment:
Q  226 tcaggaagattcggactagggattgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagata 325  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||    
T  47293642 tcaggaagattcggactagggattgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 47293543  T
Q  326 tcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaa 379  Q
      ||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  47293542 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaa 47293489  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 47293824 - 47293673
Alignment:
Q  96 ctaagctacttgacaaaaataaaataaaatctcacatggttccatccatccgcaatggaactcc-------------------ctccatccaactagaga 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                   ||||||||||| |||||    
T  47293824 ctaagctacttgacaaaaataaaataaaatctcgcatggttccatccatccgcaatggaactccattagaatgggcaaagtccctccatccaacgagaga 47293725  T
Q  177 atagccaatagccaatggagctccattacaatgggcccagaccctcccatca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293724 atagccaatagccaatggagctccattacaatgggcccagaccctcccatca 47293673  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 45876737 - 45876854
Alignment:
Q  268 acctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtcct 367  Q
    |||||||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| ||||    
T  45876737 acctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatcct 45876836  T
Q  368 taccggtccaaagcctcc 385  Q
    |||||||||||| |||||    
T  45876837 taccggtccaaaccctcc 45876854  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 248 - 385
Target Start/End: Complemental strand, 55706045 - 55705908
Alignment:
Q  248 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 347  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||||||    
T  55706045 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 55705946  T
Q  348 accatgagatgttgcgtccttaccggtccaaagcctcc 385  Q
    ||||||||||| |||||| ||||||||||||| |||||    
T  55705945 accatgagatgctgcgtctttaccggtccaaaccctcc 55705908  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 54304377 - 54304257
Alignment:
Q  259 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatg 358  Q
    |||||||| ||||  || |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||  ||||||    
T  54304377 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 54304278  T
Q  359 ttgcgtccttaccggtccaaa 379  Q
    ||||||||||||| |||||||    
T  54304277 ttgcgtccttaccagtccaaa 54304257  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q  279 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 378  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  379 agcctc 384  Q
    | ||||    
T  45858917 accctc 45858922  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 56208520 - 56208649
Alignment:
Q  256 tccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgag 355  Q
    ||||||| ||| || ||| ||| ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||    
T  56208520 tccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagag 56208619  T
Q  356 atgttgcgtccttaccggtccaaagcctcc 385  Q
    ||  ||| || ||||||||| ||| |||||    
T  56208620 atagtgcatctttaccggtctaaaccctcc 56208649  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 385
Target Start/End: Complemental strand, 35854686 - 35854569
Alignment:
Q  268 acctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtcct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  35854686 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcct 35854587  T
Q  368 taccggtccaaagcctcc 385  Q
    |||||||||||| |||||    
T  35854586 taccggtccaaatcctcc 35854569  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 248 - 389
Target Start/End: Complemental strand, 10521465 - 10521324
Alignment:
Q  248 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 347  Q
    ||||| |||| |||||| | |||||| |||||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||||||||||||||    
T  10521465 ttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaa 10521366  T
Q  348 accatgagatgttgcgtccttaccggtccaaagcctcctatg 389  Q
    ||| ||||||| ||||||||| ||| |||||| |||||||||    
T  10521365 accttgagatgctgcgtccttcccgatccaaatcctcctatg 10521324  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 35802504 - 35802553
Alignment:
Q  336 agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcc 385  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcc 35802553  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 7972058 - 7972195
Alignment:
Q  249 tgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaa 348  Q
    |||| ||||||||| ||| || |||||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| ||||||    
T  7972058 tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa 7972157  T
Q  349 ccatgagatgttgcgtccttaccggtccaaagcctcct 386  Q
    |||| ||||  ||| || ||||||||||||| ||||||    
T  7972158 ccattagatactgcatctttaccggtccaaatcctcct 7972195  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 7961694 - 7961818
Alignment:
Q  255 ctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatga 354  Q
    |||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| |||||| ||| |    
T  7961694 ctccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcatta 7961793  T
Q  355 gatgttgcgtccttaccggtccaaa 379  Q
    ||| |||| || ||||| |||||||    
T  7961794 gatattgcatctttaccagtccaaa 7961818  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q  279 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa 378  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||||| |||| ||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  379 a 379  Q
    |    
T  24357488 a 24357488  T

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