View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_40 (Length: 384)
Name: NF0818_low_40
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 3107151 - 3107495
Alignment:
| Q |
30 |
tatcagtggtttgtgaaacggtatagtatatctacctctcctcacctcccagaacactttaatgctcttcctttgcaaactatagtcctcacactttatt |
129 |
Q |
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| T |
3107151 |
tatcagtggtttgtgaaacggtatagtatatctacctctcctcacctcccagaacactttaatgctcttcctttgcaaactatagtcctcacactttatt |
3107250 |
T |
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| Q |
130 |
gataaataaatctgcaaaagaatttcatattaaataatttatagacaactcataactaatttgttgtggaaaacaaaatatacctgcnnnnnnncactta |
229 |
Q |
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| T |
3107251 |
gataaataaatctgcaaaagaatttcatattaaataatttatagacaactcataactaatttgttgtggaaaacaaaatatacctgcaaaaaaacactta |
3107350 |
T |
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| Q |
230 |
cttggttagatttatgtactgttactc----nnnnnnnnncacagaataaaatctgcattcttgcaatgatcgaggcataaacagttcatatcgtgcatt |
325 |
Q |
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| T |
3107351 |
cttggttagatttatggactgttgctctttttttttttttcacagaataaaatctgcattcttgcaatgatcgaggcataaacagttcatatcgtgcatt |
3107450 |
T |
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| Q |
326 |
tagaaatccgtttacatcaccaaattcatagacagataggcaaca |
370 |
Q |
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| T |
3107451 |
tagaaatccgtttacatcaccaaaatcatagacaaataggcaaca |
3107495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 6770907 - 6771057
Alignment:
| Q |
34 |
agtggtttgtgaaacggtatagtatatctacctctcctcacctcccagaacactttaatgctcttcctttgcaaact-------atagtcctcacacttt |
126 |
Q |
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||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||| |
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| T |
6770907 |
agtggtttgtgaacctgtactgtatttctacctctcctcacctcccagaacacttcaatgatcttcctttgcaaactgcaaagtatagtcctcacaattt |
6771006 |
T |
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| Q |
127 |
attgataaataaatctgcaaaagaatttcatattaaataatttatagacaa |
177 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
6771007 |
attgataaataaacctacaaaagaatttcatattaaataatttatagacaa |
6771057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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