View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_41 (Length: 381)

Name: NF0818_low_41
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_41
NF0818_low_41
[»] chr3 (1 HSPs)
chr3 (46-371)||(55337810-55338135)
[»] chr5 (3 HSPs)
chr5 (46-322)||(43600285-43600561)
chr5 (46-322)||(43605777-43606053)
chr5 (46-322)||(43611269-43611545)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 46 - 371
Target Start/End: Complemental strand, 55338135 - 55337810
Alignment:
Q  46 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattctctttcctccttcaatgtcatttgtattttctgttttc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  55338135 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatttcatttgtattttctgttttc 55338036  T
Q  146 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 245  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  55338035 aatgcataaccaactcaaaaggaaggattattcccagagttttattaataaataagtcctgttcagtattagtacgaatcttacaaggttctatcaactg 55337936  T
Q  246 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtggatgaacatgaacgattaatctga 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55337935 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgctttggggaagacgacggtggatgaacatgaacgattaatctga 55337836  T
Q  346 gtgtattttttcttttcttctctgtg 371  Q
    |||||||||| |||||||||||||||    
T  55337835 gtgtatttttccttttcttctctgtg 55337810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 43600285 - 43600561
Alignment:
Q  46 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattctctttcctccttcaatgtcatttgtattttctgttttc 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  43600285 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttc 43600384  T
Q  146 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600385 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 43600484  T
Q  246 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600485 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 43600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 43605777 - 43606053
Alignment:
Q  46 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattctctttcctccttcaatgtcatttgtattttctgttttc 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  43605777 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttc 43605876  T
Q  146 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43605877 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 43605976  T
Q  246 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43605977 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 43606053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 43611269 - 43611545
Alignment:
Q  46 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattctctttcctccttcaatgtcatttgtattttctgttttc 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  43611269 ggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttc 43611368  T
Q  146 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43611369 aatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactg 43611468  T
Q  246 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43611469 gtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg 43611545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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