View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_42 (Length: 379)
Name: NF0818_low_42
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 167 - 350
Target Start/End: Complemental strand, 5415731 - 5415548
Alignment:
| Q |
167 |
gagtaggaaacattaccgctctgttatcggtggctactgcagtaataacaaacataaggaagaaagtgcatatgaactcgattacaaaagcttgcaaatt |
266 |
Q |
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| T |
5415731 |
gagtaggaaacattaccgctctgttatcggtggctactgcagtaataacaaacataaggaagaaagtgcatatgaactcgattacaaaagcttgcaaatt |
5415632 |
T |
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| Q |
267 |
agaaccagctggaagtgttccaataaaatgatcatcttcaccattaaatattagtctgagggttccacttgctaatgtggatcc |
350 |
Q |
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| T |
5415631 |
agaaccagctggaagtgttccaataaaatgatcatcttcaccattaaatattagtctgaggcttccacttgctaatgtggatcc |
5415548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 5415897 - 5415832
Alignment:
| Q |
13 |
aatatgaaaagcataccactactattttgaagaactcttcttccaaaagatatctttatataagtt |
78 |
Q |
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| T |
5415897 |
aatatgaaatgcataccactactattttgaagaactcttattccaaaagatatctttatataagtt |
5415832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 5397759 - 5397650
Alignment:
| Q |
178 |
attaccgctctgttatcggtggctactgcagtaataacaaacataaggaagaaagtgcatatgaactcgattacaaaagcttgcaaattagaaccagctg |
277 |
Q |
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| T |
5397759 |
attaccgctctattatcagtggcaactccagaaatgatgaacataaggaagaaagtgataataaattcgaccacaaaagcttgaagatcagaaccagctg |
5397660 |
T |
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| Q |
278 |
gaagtgttcc |
287 |
Q |
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| T |
5397659 |
gaagtgttcc |
5397650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 5407130 - 5407186
Alignment:
| Q |
178 |
attaccgctctgttatcggtggctactgcagtaataacaaacataaggaagaaagtg |
234 |
Q |
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| T |
5407130 |
attaccgctctattatcggtggcaactccagaaatgacgaacataaggtagaaagtg |
5407186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 36268448 - 36268277
Alignment:
| Q |
179 |
ttaccgctctgttatcggtggctactgcagtaataacaaacataaggaagaaagtgcatatgaactcgattacaaaagcttgcaaattagaaccagctgg |
278 |
Q |
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|||||||||| ||||| ||||| ||| ||| || | |||||||||| | |||||| ||||| || || ||||||||||| | | ||| |||||||| |
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| T |
36268448 |
ttaccgctctattatcagtggcaactccagatatgataaacataaggtaaaaagtgatgatgaattcaatcacaaaagcttgaaggtcagacccagctgg |
36268349 |
T |
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| Q |
279 |
aagtgttccaataaaatgatcatcttcaccattaaatattagtctgagggttccacttgctaatgtggatcc |
350 |
Q |
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||||||||||| ||| |||| || || || ||||||||||||| || ||||||||||| | ||||||||| |
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| T |
36268348 |
aagtgttccaacaaattgattatgtttgccggtaaatattagtctaagagttccacttgcaagtgtggatcc |
36268277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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