View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_43 (Length: 378)
Name: NF0818_low_43
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 50470302 - 50469963
Alignment:
| Q |
10 |
ataatacttatgtaaatagattaatcgaatgatatatatcagaggtgatttatatatggaatgttttaagattttgagtgaatatatgtatgtctaactc |
109 |
Q |
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| T |
50470302 |
ataatacttatgtaaatagattaatcgaatgatatatatcagaggtgatttatatatggaatgttttaagattttaagtgaatatatgtatgtctaactt |
50470203 |
T |
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| Q |
110 |
atttatgtgattgttaatattctaacattaatatgcgattaccattcactgatttaggctactctcgcgatcagcagtgctatcatacttaattgtttga |
209 |
Q |
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| T |
50470202 |
atttatgtgattgttaatattctaacattaatatgcgattaccattcactgatttaggctactctcgggatcaaaagtgctaccatacttaattgtttga |
50470103 |
T |
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| Q |
210 |
ctaaagatgacggacttcatgtattgaaaatgagtccatcacgatgaaaccctaaagagcccacattaaatggaaaccctagtgttaagcaacatatagt |
309 |
Q |
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| T |
50470102 |
ctaaagatgacggacttcatgtattgaaaatgagtccatcacgatgaaaccctaaagagcccacattaaatggaaaccctagtgttaagcaacatatagt |
50470003 |
T |
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| Q |
310 |
tgaaggggctcctatacccaatgttataggctaccatcat |
349 |
Q |
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| T |
50470002 |
tgaaggggctcctatacccaatgttataggctaccatcat |
50469963 |
T |
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