View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_low_44 (Length: 376)
Name: NF0818_low_44
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_44 |
 | |
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| [»] scaffold0038 (3 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 28525268 - 28524984
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagggnnn |
100 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28525268 |
aacaaaacctggttcctccagcctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaaggggaa |
28525169 |
T |
|
| Q |
101 |
nnnnnnn--cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||| ||||||||| |
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|
| T |
28525168 |
aaaaaaaaacctgattcaatagcatgtttctggccgaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaat |
28525069 |
T |
|
| Q |
199 |
ttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatta |
283 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| | |||||| ||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
28525068 |
ttctctaaggcacttgcaatcatccaatataagagcatataaaaactgaaaatctttgatgcattctggaagaattgtgaaatta |
28524984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 28328634 - 28328355
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagggnnn |
100 |
Q |
| |
|
||||||| || || |||||| |||| |||||||||||||| ||||| | || | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28328634 |
aacaaaattttgtatctccagcctcgtgcagttcctgttaaccatatagaattgatagagtaaacaatcttataaaatattaagtcaaatacaaggaata |
28328535 |
T |
|
| Q |
101 |
nnnnnnn----cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctcta |
196 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| |||||||||||| ||||||||||||| || | ||||||| |
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|
| T |
28328534 |
aaaacacaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctcta |
28328435 |
T |
|
| Q |
197 |
atttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgt |
276 |
Q |
| |
|
||||||| |||||||||||||| || |||| ||| | | |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28328434 |
atttctcgaaggcacttgcaatcatccaatgtaagcttcgacaaaaagcgacaatctttgatgcattctggaagaattgt |
28328355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 28506270 - 28505991
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagggnnn |
100 |
Q |
| |
|
||||||| || || |||||| |||| |||||||||||||| ||||| | || | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28506270 |
aacaaaattttgtatctccagcctcgtgcagttcctgttaaccatatagaattgatagagtaaacaatcttataaaatattaagtcaaatacaaggaata |
28506171 |
T |
|
| Q |
101 |
nnnnnnn----cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctcta |
196 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| |||||||||||| ||||||||||||| || | ||||||| |
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|
| T |
28506170 |
aaaacacaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctcta |
28506071 |
T |
|
| Q |
197 |
atttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgt |
276 |
Q |
| |
|
||||||| |||||||||||||| || |||| ||| | | |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
28506070 |
atttctcgaaggcacttgcaatcatccaatgtaagcttcgacaaaaagcgacaatctttgatgcattctggaagaattgt |
28505991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 283
Target Start/End: Complemental strand, 28239300 - 28239125
Alignment:
| Q |
108 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |||||||||||| || | |||||||||||||||||| |
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|
| T |
28239300 |
cctgattcaatagcatgtttctggccgaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
28239201 |
T |
|
| Q |
208 |
gcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatta |
283 |
Q |
| |
|
||| ||||||| || |||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28239200 |
gcatttgcaatcatccaatataagatccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaatta |
28239125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28246398 - 28246107
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagg---- |
96 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
28246398 |
aacaaaatttggttcctccagcctcatgcagttcctgttagccataaataattcattgagtaaacaatattatataatattaagtcaaatacaaggaaaa |
28246299 |
T |
|
| Q |
97 |
------gnnnnnnnnnncctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacc |
190 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| | |||||||||| |||||||||||| || | | |
|
|
| T |
28246298 |
caataaacaaaacaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatc |
28246199 |
T |
|
| Q |
191 |
cctctaatttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28246198 |
cctctaatttctctaaggcacttgcaatcatccaacctaagagaccataaaaagcgacaatctttgatgcattctggaagaattgtgaaatt |
28246107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 108 - 283
Target Start/End: Complemental strand, 28191326 - 28191151
Alignment:
| Q |
108 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||| | ||||||||| | |||||||| | || | |||||||||||||||||| |
|
|
| T |
28191326 |
cctgattcaatagcatgtttctacacgaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaag |
28191227 |
T |
|
| Q |
208 |
gcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatta |
283 |
Q |
| |
|
||||||||||| || |||| |||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28191226 |
gcacttgcaatcatccaatataagatccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaatta |
28191151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28239420 - 28239325
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagg |
96 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28239420 |
aacaaaatatggttcctccagcctcatgcagttcctgttagccataaataattcatagagtaaacaatcttataaaatattaagacaaatacaagg |
28239325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 28142497 - 28142384
Alignment:
| Q |
172 |
ttttaaatttggcggcacccctctaatttctctaaggcacttgcaattattcaattcaaga-tctgttaaaaagtgacaatctttgatgcattctggaag |
270 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| ||| |||| ||||||| ||||||||| ||||| ||||||| || ||||||| |||||| ||||| |
|
|
| T |
28142497 |
ttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgt-aaaaagttgcattctttgaggcattccggaag |
28142399 |
T |
|
| Q |
271 |
aattgtaaaattact |
285 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28142398 |
gattgtaaaattact |
28142384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 283
Target Start/End: Complemental strand, 39462 - 39287
Alignment:
| Q |
108 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
39462 |
cctgattcaatagcatgtttctggccgaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
39363 |
T |
|
| Q |
208 |
gcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatta |
283 |
Q |
| |
|
||| ||||||| || |||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39362 |
gcatttgcaatcatccaatataagatccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaatta |
39287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 46560 - 46269
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagg---- |
96 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
46560 |
aacaaaatttggttcctccagcctcatgcagttcctgttagccataaataattcattgagtaaacaatattatataatattaagtcaaatacaaggaaaa |
46461 |
T |
|
| Q |
97 |
------gnnnnnnnnnncctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacc |
190 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| | |||||||||| |||||||||||| || | | |
|
|
| T |
46460 |
caataaacaaaacaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatc |
46361 |
T |
|
| Q |
191 |
cctctaatttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46360 |
cctctaatttctctaaggcacttgcaatcatccaacctaagagaccataaaaagcgacaatctttgatgcattctggaagaattgtgaaatt |
46269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39582 - 39487
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagg |
96 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39582 |
aacaaaatatggttcctccagcctcatgcagttcctgttagccataaataattcatagagtaaacaatcttataaaatattaagacaaatacaagg |
39487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 55370 - 55662
Alignment:
| Q |
1 |
aacaaaacttggtttctccaccctcatgcagttcctgttagccataaataaatcatagagtaaacaatcttataaaatattaagtcaaatacaagg---- |
96 |
Q |
| |
|
|||||||| |||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
55370 |
aacaaaacatggtttgtccagcctcatgcatatcctgttagccataaataaatcaaagagtaaacagtattatataatattaagtcaaatacaaggaaaa |
55469 |
T |
|
| Q |
97 |
------gnnnnnnnnnncctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacc |
190 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| |||| ||||| | |||||||||| ||||| |||||| || | | |
|
|
| T |
55470 |
caaaaaacaaaacaaaacctgattcaatagcatgtgtttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatc |
55569 |
T |
|
| Q |
191 |
cctctaatttctctaaggcacttgcaattattcaattcaagatctgttaaaaagtgacaatctttgatgcattctggaagaattgtaaaatta |
283 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| |||| |||||| |||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
55570 |
cctctaatttctcgaaggcacttgcaatcatccaatttaagaaaccacaaaaagcgacaatctttcatgcattccggaagaattgtgaaatta |
55662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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