View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_low_45 (Length: 375)
Name: NF0818_low_45
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 79 - 350
Target Start/End: Complemental strand, 9094131 - 9093856
Alignment:
| Q |
79 |
ttcaaatttga-tgttactctttttaataatttttaataaaaatattataccttctcttnnnnnnntattagatctattttcgttttatatgattataaa |
177 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
9094131 |
ttcaaatttgaatgttactctttttaataatttttaataaaaatattataccttctcttaaaaaaatattagatctattttcgttttttatgattataaa |
9094032 |
T |
|
| Q |
178 |
agttannnnnnnnatcaaaaagaataatatttttagaaatatatttaaatagtacaggattactttaccacaagta---tctttgtacccagacccatat |
274 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
9094031 |
aattattttttttatcaaaaagagtaatatttttagaaatatatttaaatagtacaggattactttaccacaagtatcgtcgtcgtacccagacccatat |
9093932 |
T |
|
| Q |
275 |
gccaacggcaaaaagcagtcgggacgaaagcaatgaagttcctcggtggaagggtcgaagaagcatccattttgat |
350 |
Q |
| |
|
||||||| ||||||||||| |||| | |||| ||||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
9093931 |
gccaacgacaaaaagcagtagggatgggagcattgaagttcctcggtggaagtgtcgaaggagcatcgattttgat |
9093856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 9094164 - 9094126
Alignment:
| Q |
10 |
aagaatattagggagcatcttatctgaatctgattcaaa |
48 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9094164 |
aagaaaattagggagcatcttatctgaatctgattcaaa |
9094126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 63 times since January 2019
Visitors: 5846