View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_47 (Length: 364)
Name: NF0818_low_47
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 28820225 - 28820552
Alignment:
| Q |
11 |
catagggatataaagactaacaatatcctcttagatgatgatcttcagcctagaattgctgattttggattggcaagacttctaccagaagatcaatctc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28820225 |
catagggatataaagactaacaatatcctcttagatgatgatcttcagcctagaattgctgattttggattggcaagacttctaccagaagatcaatctc |
28820324 |
T |
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| Q |
111 |
atgttagcacaaaatttgcaggaacattgtaagtccaaaaatgttaacttctattaagatgtagctgtaataaatta-ggttattttaatgctacatcct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28820325 |
atgttagcacaaaatttgcaggaacattgtaagtccaaaaatgttaacttctattaagatgtagctgtaataaattagggttattttaatgctacatcct |
28820424 |
T |
|
| Q |
210 |
gcttctatgtgtgactatttgtgtacatgtcaggggatacactgcaccagaatatgcaattcatggtcagttatcagtgaaggctgatacctacagtttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28820425 |
ccttctatgtgtgactatttgtgtacatgtcaggggatacactgcaccagaatatgcaattcatggtcagttatcagtgaaggctgatacctacagtttt |
28820524 |
T |
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| Q |
310 |
ggtgttgtagtcctagaaatcataagtg |
337 |
Q |
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| T |
28820525 |
ggtgttgtagtcctagaaatcataagtg |
28820552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 28836353 - 28836453
Alignment:
| Q |
237 |
tgtcaggggatacactgcaccagaatatgcaattcatggtcagttatcagtgaaggctgatacctacagttttggtgttgtagtcctagaaatcataagt |
336 |
Q |
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||||||||||||||| ||||| || |||||||| |||||||| ||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
28836353 |
tgtcaggggatacacagcacctgagtatgcaatccatggtcaattatcagaaaaggctgatacctacagctatggaattgtagtcctagaaatcataagt |
28836452 |
T |
|
| Q |
337 |
g |
337 |
Q |
| |
|
| |
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| T |
28836453 |
g |
28836453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 28826869 - 28826969
Alignment:
| Q |
237 |
tgtcaggggatacactgcaccagaatatgcaattcatggtcagttatcagtgaaggctgatacctacagttttggtgttgtagtcctagaaatcataagt |
336 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||||||| ||||||| ||||||||||||||||| | || ||||||||||||||||||||||| |
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| T |
28826869 |
tgtcaggggatacacagcacctgagtatgcaatccatggtcaattatcagaaaaggctgatacctacagctacggaattgtagtcctagaaatcataagt |
28826968 |
T |
|
| Q |
337 |
g |
337 |
Q |
| |
|
| |
|
|
| T |
28826969 |
g |
28826969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 28826633 - 28826765
Alignment:
| Q |
11 |
catagggatataaagactaacaatatcctcttagatgatgatcttcagcctagaattgctgattttggattggcaagacttctaccagaagatcaatctc |
110 |
Q |
| |
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||||| |||||||||| || |||||||||| | |||||| ||||||| || | ||||||||||||||||||||| | ||| | |||| |||| ||||| |
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| T |
28826633 |
catagagatataaagagtagcaatatcctccttgatgataatcttcatcccaaaattgctgattttggattggcgcggcttttgccaggggatcgatctc |
28826732 |
T |
|
| Q |
111 |
atgttagcacaaaatttgcaggaacattgtaag |
143 |
Q |
| |
|
|| | |||||| | |||||||||||||||||| |
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|
| T |
28826733 |
atctaagcacaggagttgcaggaacattgtaag |
28826765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 28836083 - 28836156
Alignment:
| Q |
11 |
catagggatataaagactaacaatatcctcttagatgatgatcttcagcctagaattgctgattttggattggc |
84 |
Q |
| |
|
||||| ||||||||||||| |||||| ||| | |||||| ||||||| || | ||||||||||||||||||||| |
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|
| T |
28836083 |
catagagatataaagactagcaatatactccttgatgataatcttcaccccaaaattgctgattttggattggc |
28836156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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