View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_5 (Length: 677)
Name: NF0818_low_5
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 38544189 - 38543868
Alignment:
| Q |
30 |
ccacgactacgatgtaagccgatgataatacatacatagacccggcgatcactattttcagtcatatgggatgtgtgatatcacgtgtaactgagagaaa |
129 |
Q |
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| T |
38544189 |
ccacgactacgacgtaagccgatgataatacatacatagacccggcgatcactattttcagacatatgggatgtgttacatcacgtataattgagagaaa |
38544090 |
T |
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| Q |
130 |
aaagcacatgaaatatacgacttaggatgcttattccctaatgtatctaacgtatacgcaatgatagtctcaccaattttcatgtttacatttatctttg |
229 |
Q |
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| T |
38544089 |
aaagcacatgaaatatacgacttagg-tgcttattccctaatgtatctaacgtatacgcaatgatagtctcgccaattttcatgtttacatttatctttg |
38543991 |
T |
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| Q |
230 |
attcctaaatattttccaagcatatgccaaatgcaaataaaacaaaatatggaaatagtcaaaagtttaatgatcttgtgaaagcttgagaattagatga |
329 |
Q |
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| T |
38543990 |
attcctaaatattttccaagcatatgcc-aatgcaaataaaacaaaatatggaaatagtcaaaagtttaatgatcttgtgaaagcttgagaattagatga |
38543892 |
T |
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| Q |
330 |
acaactgtgattattggttctgtc |
353 |
Q |
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| T |
38543891 |
acaactgtgattattggttctgtc |
38543868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 420 - 668
Target Start/End: Complemental strand, 38543805 - 38543554
Alignment:
| Q |
420 |
gaaattgttaggccgaaagcaatgactaagagtggaaccctgatccctcc---acttatgtatgagtttcaatgtgtgagtttcgatggttatttgtctt |
516 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38543805 |
gaaattgttagaccgaacacaatgactaagggtggaaccccgatccctcctccacttatgtatgagtttcaatgtgtgagtttcgatgattatttgtctt |
38543706 |
T |
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| Q |
517 |
ttcgcctctctatcnnnnnnntatttgtgtaaggcattgcctaaggaaggcaccacataaattttgaatagaatgcctagcataggcaacaccaacatgc |
616 |
Q |
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| T |
38543705 |
ttcgcctctctactaaaaaaatatttgtgtaaggcattgcctaaggaaggcaccacataaattttgaatagaatgcctaccataggcaacacctacatgc |
38543606 |
T |
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| Q |
617 |
ataaaattataatttctaaaattaaaattcaactatttctaaatagaataat |
668 |
Q |
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| T |
38543605 |
ataaaattataatttctaaaattaaaattcaactatttctaaatagaataat |
38543554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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