View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_50 (Length: 328)
Name: NF0818_low_50
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 43600240 - 43599986
Alignment:
| Q |
15 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
114 |
Q |
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| T |
43600240 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
43600141 |
T |
|
| Q |
115 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcatt-ccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600140 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcattcccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
43600041 |
T |
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| Q |
214 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600040 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
43599986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 43605732 - 43605478
Alignment:
| Q |
15 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605732 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
43605633 |
T |
|
| Q |
115 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcatt-ccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605632 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcattcccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
43605533 |
T |
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| Q |
214 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605532 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
43605478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 43611224 - 43610970
Alignment:
| Q |
15 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611224 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
43611125 |
T |
|
| Q |
115 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcatt-ccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611124 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcattcccccaacaagctttaactaatagcatcattgaaagccttttaattttcc |
43611025 |
T |
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| Q |
214 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611024 |
agcatttatgacaatttcagctagtgacatgaacttcctcttgattaatcaacac |
43610970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 55338173 - 55338407
Alignment:
| Q |
15 |
tctatttaaaacatacaactaaattaggattggccatttctattgagcctgcacctaacatacacattcctaatagtatgcctacgaacattcattaaat |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
55338173 |
tctatttaaaacatacaactaaattaggattggccatttctatcgagcctgcacctaacgtacacattcctaacagtatgcctacgaacattcattaaat |
55338272 |
T |
|
| Q |
115 |
gaatgcctttcagcatgctgacctgaagagcttggggattatgaagcattccccaacaagctttaactaatagcatcattgaaagccttttaattttcca |
214 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55338273 |
gaatgcctttcagcatgctgacctgaagagcatggggattatgaagcattccccaacaagctttaattaatagcatcattgaaagccttttaattttcca |
55338372 |
T |
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| Q |
215 |
gcatttatgacaatttcagctagtgacatgaactt |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
55338373 |
gcatttatgacaatttcagctagtgacatgaactt |
55338407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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