View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_53 (Length: 321)

Name: NF0818_low_53
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_53
NF0818_low_53
[»] chr1 (3 HSPs)
chr1 (1-308)||(8753474-8753781)
chr1 (183-239)||(48715040-48715096)
chr1 (180-239)||(27793798-27793858)
[»] scaffold0321 (1 HSPs)
scaffold0321 (180-239)||(17990-18049)
[»] chr6 (7 HSPs)
chr6 (180-239)||(12877771-12877830)
chr6 (184-239)||(15951562-15951617)
chr6 (184-239)||(3836107-3836163)
chr6 (180-239)||(14579019-14579078)
chr6 (180-224)||(21183027-21183071)
chr6 (207-239)||(2936638-2936670)
chr6 (184-239)||(16712895-16712948)
[»] chr4 (8 HSPs)
chr4 (184-239)||(31768249-31768304)
chr4 (180-239)||(6664383-6664443)
chr4 (180-239)||(580597-580656)
chr4 (180-239)||(6685798-6685855)
chr4 (180-239)||(6660793-6660852)
chr4 (181-235)||(6682347-6682399)
chr4 (180-239)||(13250954-13251013)
chr4 (180-239)||(26947487-26947546)
[»] chr2 (7 HSPs)
chr2 (184-239)||(80483-80538)
chr2 (180-239)||(13438151-13438210)
chr2 (180-239)||(1234346-1234404)
chr2 (180-239)||(10938461-10938519)
chr2 (180-239)||(10941818-10941876)
chr2 (180-239)||(10944323-10944381)
chr2 (180-239)||(10947687-10947745)
[»] chr7 (2 HSPs)
chr7 (180-230)||(24509999-24510049)
chr7 (180-235)||(37006285-37006339)
[»] chr3 (1 HSPs)
chr3 (183-239)||(6240622-6240678)
[»] scaffold0933 (1 HSPs)
scaffold0933 (180-235)||(1546-1601)
[»] scaffold0019 (1 HSPs)
scaffold0019 (180-239)||(174091-174150)
[»] chr8 (4 HSPs)
chr8 (180-239)||(24681390-24681449)
chr8 (181-238)||(38059154-38059211)
chr8 (183-239)||(29260378-29260432)
chr8 (183-239)||(29275405-29275462)
[»] chr5 (1 HSPs)
chr5 (178-239)||(1354199-1354260)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 8753474 - 8753781
Alignment:
Q  1 tagtgcacaaattttcatatatatgtaaaatggtgttaaaaattgttttatcttggttcagcatctaatgatacgagggtgacttttctatattcttcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8753474 tagtgcacaagttttcatatatatgtaaaatggtgttaaaaattgttttatcttggttcagcatctaatgatacgagggtgacttttctatattcttcat 8753573  T
Q  101 gtctaacaaaaaccgtcctttatcaatgccaattaaaattgacagttat--nnnnnnntggaattacaacataggaataagatatttttctatatttctc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  8753574 gtctaacaaaaaccgtcctttatcaatgccaattaaaattgacagttatgaaaaaaaatggaattacaacataggaataagatatttttctatatttctc 8753673  T
Q  199 aattaaatatatgggacacaaaatatttgaaacttttgaaaaatttacaacaacatcgactcttttttcaattgcttcatactgcattataatacatcgt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||    
T  8753674 aattaaatatatgggacacaaaatatttgaaacttttgaaaaatttacaacaacatcaactcttttttcaattgcttcatactgc--tttaatacatcgt 8753771  T
Q  299 tattattaga 308  Q
    ||||||||||    
T  8753772 tattattaga 8753781  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 48715040 - 48715096
Alignment:
Q  183 tttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||    
T  48715040 tttttctatatttctcaattgaaaatatggaacacaaattatttgaaacttttgaaa 48715096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 27793798 - 27793858
Alignment:
Q  180 atatttttctatatttctcaattaaata-tatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||| |||||||||| ||||||| | ||||| ||||||||||||| ||||||||||||    
T  27793798 atattttcctatatttcttaattaaaaaatatggaacacaaaatatttaaaacttttgaaa 27793858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 18049 - 17990
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18049 atatttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaa 17990  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 12877771 - 12877830
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12877771 atatttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaa 12877830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 15951617 - 15951562
Alignment:
Q  184 ttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  15951617 ttttctatatttctcaattaaaaatatgggacacaaattatttaaaacttttgaaa 15951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 3836107 - 3836163
Alignment:
Q  184 ttttctatatttctcaattaaatatatgggacac-aaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  3836107 ttttctatatttctcaattaaaaatatggaacacaaaaatatttgaaacttttgaaa 3836163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 14579078 - 14579019
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||||| |||| | | | ||||||||||||||||||||||    
T  14579078 atatttttctatatttctcaattaaaaatatagaatataaaatatttgaaacttttgaaa 14579019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 21183027 - 21183071
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatat 224  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  21183027 atatttttctatatttctcaattgaaaatatggaacacaaaatat 21183071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 2936638 - 2936670
Alignment:
Q  207 atatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||| ||||||||    
T  2936638 atatgggacacaaaatatttgaaatttttgaaa 2936670  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 16712895 - 16712948
Alignment:
Q  184 ttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||| ||||||  ||||||||||  ||||||| ||||||||||||    
T  16712895 ttttctatatttctctattaaaattatgggacac--aatatttaaaacttttgaaa 16712948  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 31768249 - 31768304
Alignment:
Q  184 ttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31768249 ttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaa 31768304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6664383 - 6664443
Alignment:
Q  180 atatttttctatatttctcaattaaata-tatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  6664383 atatttttctatatttctcaattaaaaaatatgggacacaaaatatttgaaacttttgaaa 6664443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 580597 - 580656
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  580597 atatttttctatatttctcaattgaaaatatgggacacaaaatatttaaaacttttgaaa 580656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 6685855 - 6685798
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  6685855 atatttttttatatttctcaattaaaaatatggg--acaaaatatttgaaacttttgaaa 6685798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 6660793 - 6660852
Alignment:
Q  180 atatttttctatatttctcaatt--aaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||  ||| |||||||||||  ||||||||||||||||||||    
T  6660793 atatttttctatatttctcaattaaaaaaatatgggacac--aatatttgaaacttttgaaa 6660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 6682399 - 6682347
Alignment:
Q  181 tatttttctatatttctcaattaaatatatgggacacaaaatatttgaaactttt 235  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||    
T  6682399 tatttttctatatttctcaattaaaaatatagg--acaaaatatttgaaactttt 6682347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 13250954 - 13251013
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||| |||| | |||||| || |||||||||| ||||||||||||||||||||||    
T  13250954 atatttttcgatatatttcaattgaaaatatgggacataaaatatttgaaacttttgaaa 13251013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 26947546 - 26947487
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||  ||||||||||||| || |||||||||||||||||||| | ||||||||||    
T  26947546 atatttttagatatttctcaattgaaaatatgggacacaaaatattttagacttttgaaa 26947487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 80538 - 80483
Alignment:
Q  184 ttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  80538 ttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaa 80483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 13438151 - 13438210
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||| || || ||||||||||||||||  ||||||||||||    
T  13438151 atatttttctatatttctcaattgaaaatgtgggacacaaaatattcaaaacttttgaaa 13438210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 1234404 - 1234346
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| ||| |||||||||||    
T  1234404 atatttttctatatttctcaatagaaaatatgagacacaaaataattg-aacttttgaaa 1234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10938461 - 10938519
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| ||| |||||||||||    
T  10938461 atatttttctatatttctcaatagaaaatatgagacacaaaataattg-aacttttgaaa 10938519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10941818 - 10941876
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| ||| |||||||||||    
T  10941818 atatttttctatatttctcaatagaaaatatgagacacaaaataattg-aacttttgaaa 10941876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10944323 - 10944381
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| ||| |||||||||||    
T  10944323 atatttttctatatttctcaatagaaaatatgagacacaaaataattg-aacttttgaaa 10944381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10947687 - 10947745
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| ||| |||||||||||    
T  10947687 atatttttctatatttctcaatagaaaatatgagacacaaaataattg-aacttttgaaa 10947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 24509999 - 24510049
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaa 230  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  24509999 atatttttctatatttctcaattaaaaatataggacacaaaatatttgaaa 24510049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 37006339 - 37006285
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaactttt 235  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  37006339 atatttttc-atatttctaaattaaaaatatgggacacaaaatatttgaaactttt 37006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 6240622 - 6240678
Alignment:
Q  183 tttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  6240622 tttttatatatttctcaattaaaaatataggacacaaaatatttaaaacttttgaaa 6240678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 1546 - 1601
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaactttt 235  Q
    ||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||    
T  1546 atatttttcgatatttctcaattgataatatgggacacaaaatatttgaaactttt 1601  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 174150 - 174091
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||||||| ||||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  174150 atatttttcgatatttctcaattgaaagtatgagacacaaaatatttgaaacttttgaaa 174091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 24681390 - 24681449
Alignment:
Q  180 atatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||| |||||||||||    
T  24681390 atatttttctatatttctcaattaaaaatctaagacacaaaatatttgtaacttttgaaa 24681449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 38059211 - 38059154
Alignment:
Q  181 tatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaa 238  Q
    |||||||||||||||||||||||||   ||| |||||||||||||| |||||||||||    
T  38059211 tatttttctatatttctcaattaaaataatgtgacacaaaatatttaaaacttttgaa 38059154  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 29260432 - 29260378
Alignment:
Q  183 tttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    ||||| ||||||||||||||||| |||||||  | ||||||||||||||||||||||    
T  29260432 tttttttatatttctcaattaaaaatatggg--aaaaaatatttgaaacttttgaaa 29260378  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 29275462 - 29275405
Alignment:
Q  183 tttttctatatttctcaattaaatatatgggac-acaaaatatttgaaacttttgaaa 239  Q
    ||||| ||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||    
T  29275462 tttttttatatttctcaattaaaaatatgagacaaaaaaatgtttgaaacttttgaaa 29275405  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 1354199 - 1354260
Alignment:
Q  178 agatatttttctatatttctcaattaaatatatgggacacaaaatatttgaaacttttgaaa 239  Q
    |||| ||||||||||||||||||||||| ||||| |||||||  ||||| ||||||||||||    
T  1354199 agatttttttctatatttctcaattaaaaatatgagacacaaggtatttaaaacttttgaaa 1354260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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