View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_55 (Length: 319)
Name: NF0818_low_55
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 6145876 - 6146096
Alignment:
| Q |
99 |
ttttctctaccaaagctgctactatcattgttaaaactgaaaaaaccattccagcaccgatcctttgaagaatgttcatccctctttcattgccgcttat |
198 |
Q |
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| T |
6145876 |
ttttctcgaccaaagctgctactatcattgttaaaaccgaaaaaaccattccaataccaatcctttgaagaatgttcatccctctttcattgccacttat |
6145975 |
T |
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| Q |
199 |
ttttcttaaaaccggtacgaggattttgtcgtagattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagctggtggaatctcaaca |
298 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |
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| T |
6145976 |
ttttcttaaaactggcacgaggattttgtcgtaaattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagcgggtggaatctcgaaa |
6146075 |
T |
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| Q |
299 |
ccatgtcctatttttctattc |
319 |
Q |
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||||||||||||||||||||| |
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| T |
6146076 |
ccatgtcctatttttctattc |
6146096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 23692681 - 23692872
Alignment:
| Q |
99 |
ttttctctaccaaagctgctactatcattgttaaaactgaaaaaaccattccagcaccgatcctttgaagaatgttcatccctctttcattgccgcttat |
198 |
Q |
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||||||||| |||||||| ||||||||||| | || | |||| ||||||| ||| ||||||||||| ||||| || ||||||||||| |||| |
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| T |
23692681 |
ttttctctattaaagctgccactatcattgtaataatagtgaaaaacattccaaaaccaatcctttgaaggatgttaattcctctttcattttgatttat |
23692780 |
T |
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| Q |
199 |
ttttcttaaaaccggtacgaggattttgtcgtagattgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagctggtggaa |
290 |
Q |
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| T |
23692781 |
ttttcttaacataggtactagaatcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattgaagctggtggaa |
23692872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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