View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_58 (Length: 313)

Name: NF0818_low_58
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_58
NF0818_low_58
[»] chr8 (7 HSPs)
chr8 (93-313)||(15349337-15349557)
chr8 (219-303)||(4030191-4030275)
chr8 (225-283)||(12200913-12200971)
chr8 (225-283)||(12445341-12445399)
chr8 (113-185)||(4030303-4030375)
chr8 (225-266)||(12195898-12195939)
chr8 (225-266)||(12440326-12440367)
[»] chr4 (23 HSPs)
chr4 (98-303)||(48871019-48871218)
chr4 (98-303)||(48876323-48876522)
chr4 (98-303)||(48886705-48886904)
chr4 (224-303)||(45365623-45365702)
chr4 (219-303)||(45384293-45384377)
chr4 (233-283)||(7237172-7237222)
chr4 (220-269)||(49043605-49043654)
chr4 (233-285)||(7908884-7908936)
chr4 (219-303)||(48155826-48155910)
chr4 (93-183)||(48899194-48899284)
chr4 (219-261)||(50669656-50669698)
chr4 (233-285)||(7905160-7905212)
chr4 (229-285)||(45371492-45371548)
chr4 (234-285)||(48863848-48863899)
chr4 (233-303)||(7801225-7801295)
chr4 (233-303)||(7823557-7823627)
chr4 (227-261)||(49048000-49048034)
chr4 (233-274)||(7814065-7814106)
chr4 (233-306)||(48147113-48147186)
chr4 (234-267)||(48734859-48734892)
chr4 (233-285)||(7771977-7772029)
chr4 (233-285)||(7790662-7790714)
chr4 (219-263)||(50666880-50666924)
[»] chr5 (2 HSPs)
chr5 (225-303)||(9120343-9120421)
chr5 (219-313)||(29688700-29688797)
[»] chr3 (5 HSPs)
chr3 (106-184)||(11015007-11015085)
chr3 (223-283)||(47451323-47451383)
chr3 (226-267)||(11014933-11014974)
chr3 (114-184)||(11005444-11005514)
chr3 (230-267)||(11023945-11023982)
[»] chr2 (2 HSPs)
chr2 (219-303)||(29350996-29351080)
chr2 (114-185)||(29350897-29350968)
[»] chr1 (2 HSPs)
chr1 (228-303)||(24340994-24341069)
chr1 (228-303)||(24353359-24353434)
[»] chr6 (1 HSPs)
chr6 (226-300)||(21016402-21016476)
[»] chr7 (1 HSPs)
chr7 (234-262)||(30119715-30119743)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 93 - 313
Target Start/End: Original strand, 15349337 - 15349557
Alignment:
Q  93 accctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgttcccc 192  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349337 accctttgtgccgtacaaagagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgttcccc 15349436  T
Q  193 ccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgac 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349437 ccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgac 15349536  T
Q  293 gcaaacaagaatgaagttttc 313  Q
    |||||||||||||| ||||||    
T  15349537 gcaaacaagaatgaggttttc 15349557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 4030275 - 4030191
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||| |||||| | ||||| ||||||||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  4030275 gatctcaagtgaccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 4030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 12200913 - 12200971
Alignment:
Q  225 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 283  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12200913 aagtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12200971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 12445341 - 12445399
Alignment:
Q  225 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 283  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12445341 aagtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12445399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 4030375 - 4030303
Alignment:
Q  113 agtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc 185  Q
    ||||||||||||||||||| | ||| ||||  |||||||||||||||||||||||| || |||||| ||||||    
T  4030375 agtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagc 4030303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 12195898 - 12195939
Alignment:
Q  225 aagtggctatgtatacagagtctctgctttcactccctggtg 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  12195898 aagtggccatgtatacagagtctctgctttcactccctggtg 12195939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 12440326 - 12440367
Alignment:
Q  225 aagtggctatgtatacagagtctctgctttcactccctggtg 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  12440326 aagtggccatgtatacagagtctctgctttcactccctggtg 12440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 48871019 - 48871218
Alignment:
Q  98 ttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgttccccccatt 197  Q
    |||||| ||||||| ||||||||||||||||||  | ||  |||| ||| |||||||||||||||||||||||| |||||||||| ||||| | |  | |    
T  48871019 ttgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtttctctaaat 48871118  T
Q  198 gggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaa 297  Q
    || |   |  ||||| ||   |||||   |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||    
T  48871119 ggaatgttacatgggatg---gatcc---gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48871212  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 48876323 - 48876522
Alignment:
Q  98 ttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgttccccccatt 197  Q
    |||||| ||||||| ||||||||||||||||||  | ||  |||| ||| |||||||||||||||||||||||| |||||||||| ||||| | |  | |    
T  48876323 ttgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtttctctaaat 48876422  T
Q  198 gggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaa 297  Q
    || |   |  ||||| ||   |||||   |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||    
T  48876423 ggaatgttacatgggatg---gatcc---gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48876516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 48886705 - 48886904
Alignment:
Q  98 ttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgttccccccatt 197  Q
    |||||| ||||||| ||||||||||||||||||  | ||  |||| ||| |||||||||||||||||||||||| |||||||||| ||||| | |  | |    
T  48886705 ttgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgtttctctaaat 48886804  T
Q  198 gggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaa 297  Q
    || |   |  ||||| ||   |||||   |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||    
T  48886805 ggaatgttacatgggatg---gatcc---gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaa 48886898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 45365702 - 45365623
Alignment:
Q  224 caagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||| || ||| ||||||||||    
T  45365702 caagtggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45365623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 45384377 - 45384293
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||| ||||||||  |||||||||||||||| ||||||||  ||||||| |||||||| |||||||| || ||| ||||||||||    
T  45384377 gatctcaagtggccgtgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45384293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 7237222 - 7237172
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 283  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  7237222 atgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa 7237172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 49043654 - 49043605
Alignment:
Q  220 atcccaagtggctatgtatacagagtctctgctttcactccctggtgata 269  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  49043654 atcccaagtggctatctatacagagtctttgctttcactccccggtgata 49043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 7908884 - 7908936
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    |||||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  7908884 atgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaaga 7908936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 48155910 - 48155826
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||| |||| ||| || ||||| |||  | ||||||||||    
T  48155910 gatcccaagtgaccgtgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaa 48155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 48899194 - 48899284
Alignment:
Q  93 accctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttaga 183  Q
    |||| |||||| ||||||| |||||  |||||||||||| | ||| ||   ||| ||||||||||||||||||||||||  ||||||||||    
T  48899194 acccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagagttgttaga 48899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 50669656 - 50669698
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccc 261  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  50669656 gatccaaagtggctatgtatacagagtctctactttcactccc 50669698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 7905160 - 7905212
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||    
T  7905160 atgtatacggagtctctgctttcactccccggtgataacgagcaagtttaaga 7905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 45371548 - 45371492
Alignment:
Q  229 ggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    ||||||||||||||||||||||||||||||| || | || ||||| || ||||||||    
T  45371548 ggctatgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaaga 45371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 48863848 - 48863899
Alignment:
Q  234 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    |||||||||||||||||||||||||||||  ||| | |||||| ||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaaga 48863899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 7801225 - 7801295
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7801225 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 7823557 - 7823627
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7823557 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 49048034 - 49048000
Alignment:
Q  227 gtggctatgtatacagagtctctgctttcactccc 261  Q
    ||||||||||||||||||||| |||||||||||||    
T  49048034 gtggctatgtatacagagtctttgctttcactccc 49048000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 7814065 - 7814106
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgag 274  Q
    |||||||| ||||||||||||||||||||||| || ||||||    
T  7814065 atgtataccgagtctctgctttcactccctggggacaatgag 7814106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 48147186 - 48147113
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatga 306  Q
    |||||||| ||||||||||||||||||||| |||| |||| ||   | ||||| || ||| |||||||||||||    
T  48147186 atgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaatga 48147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 48734892 - 48734859
Alignment:
Q  234 tgtatacagagtctctgctttcactccctggtga 267  Q
    |||||||||||||||||||||||||||| |||||    
T  48734892 tgtatacagagtctctgctttcactccccggtga 48734859  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 7771977 - 7772029
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7771977 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7772029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 7790662 - 7790714
Alignment:
Q  233 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 285  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7790662 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7790714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 50666880 - 50666924
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccctg 263  Q
    ||||||||||||  ||||||||||||||||| |||||||| ||||    
T  50666880 gatcccaagtggtcatgtatacagagtctctactttcacttcctg 50666924  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 9120343 - 9120421
Alignment:
Q  225 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||| || |||||||  || ||| ||||||||||    
T  9120343 aagtggctctttatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaa 9120421  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 29688700 - 29688797
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccc---tggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaagttttc 313  Q
    |||||| ||||| |||||||||||| |||||||||||||| ||   |||||| | ||| ||||||||||| || |||||| |||||||||| ||||||    
T  29688700 gatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaatgaggttttc 29688797  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 11015085 - 11015007
Alignment:
Q  106 tacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag 184  Q
    |||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||| |||||    
T  11015085 tacaaaaagtggtggtattattggaacaaatggtggtggtgaattggtaaagtatgatggcaatggtcagttgctagag 11015007  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 47451383 - 47451323
Alignment:
Q  223 ccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 283  Q
    |||||||| |||||| |||||||||||||||||||| || ||||| |||||||| ||||||    
T  47451383 ccaagtggttatgtacacagagtctctgctttcacttcccggtgacaatgagcaagcttaa 47451323  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 11014974 - 11014933
Alignment:
Q  226 agtggctatgtatacagagtctctgctttcactccctggtga 267  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  11014974 agtggttatgtacacagagtctctgctttcactccctggtga 11014933  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 11005514 - 11005444
Alignment:
Q  114 gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag 184  Q
    ||||| |||||||||| | ||||| ||||  || ||||||||||||||||| |||||| |||||| |||||    
T  11005514 gtggtcatattattgggacaaatggtggtactggattggtgaagtatgatggcaatggtcagttgctagag 11005444  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 11023982 - 11023945
Alignment:
Q  230 gctatgtatacagagtctctgctttcactccctggtga 267  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  11023982 gctatgtatacagagtccctgctttcactccccggtga 11023945  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 29350996 - 29351080
Alignment:
Q  219 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    ||||| ||||||  ||||| | ||||||| ||||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||    
T  29350996 gatccgaagtggtcatgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaa 29351080  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 29350897 - 29350968
Alignment:
Q  114 gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc 185  Q
    ||||||||||||||||||   ||| ||||  |||||||||||||||| ||||||| || |||||| ||||||    
T  29350897 gtggtgatattattggaacggatggtggtactgaattggtgaagtattatgacaaaggacagttgctagagc 29350968  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 24340994 - 24341069
Alignment:
Q  228 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24341069  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 24353359 - 24353434
Alignment:
Q  228 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 303  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24353434  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 21016402 - 21016476
Alignment:
Q  226 agtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaa 300  Q
    ||||||| |||||||||||||| ||||||||||||||| ||| || || || | |||||| || ||| |||||||    
T  21016402 agtggctgtgtatacagagtctttgctttcactccctgatgacaacgaccaagattaagaagatgacacaaacaa 21016476  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 30119743 - 30119715
Alignment:
Q  234 tgtatacagagtctctgctttcactccct 262  Q
    |||||||||||||||||||||||||||||    
T  30119743 tgtatacagagtctctgctttcactccct 30119715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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