View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_low_6 (Length: 627)
Name: NF0818_low_6
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_6 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 30 - 627
Target Start/End: Complemental strand, 38710368 - 38709770
Alignment:
| Q |
30 |
catatgtgattttcaaagcatgttcctcttctgtgatccttcattctttgctcatacaccatcaatctacaatttgaagctcatcaattgaaagagtggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710368 |
catatgtgattttcaaagcatgttcctcttctgtgatccttcattctttgctcatacaccatcaatctacaatttgaagctcatcaattgaaagagtggt |
38710269 |
T |
|
| Q |
130 |
tacatcatttgaatcttctatagaatatacaatgttcaagtattacaccaaaaagagag-gnnnnnnnnnncaccaaaaaccaccagcaccctcaaaatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
38710268 |
tacatcatttgaatcttctatagaatatacaatgttcaagtattacaccaaaaagagaaagaaaaaaaaaacaccaaaaaccaccagcaccctcaaaatg |
38710169 |
T |
|
| Q |
229 |
tcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgacca |
328 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710168 |
ccaaatcccctaataacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgacca |
38710069 |
T |
|
| Q |
329 |
ccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcatcccaa |
428 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38710068 |
ccactcaagttccggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagcccaa |
38709969 |
T |
|
| Q |
429 |
agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709968 |
agactcccgaaacaaggcaaaaaggcacccctcaactcacgaaccaccagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgc |
38709869 |
T |
|
| Q |
529 |
caaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709868 |
caaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcacc |
38709770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 204 - 591
Target Start/End: Complemental strand, 4391849 - 4391460
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||| |||| || ||||| |
|
|
| T |
4391849 |
aaaaacaaccagccccctcaaaatgtcgaatcccctaacaaaagctcctcaaagaaccaacaccaccaacagtggaaaatcaagcacatgataaagattt |
4391750 |
T |
|
| Q |
304 |
tgcttcaagc-gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaa-cttgctcccg |
401 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
4391749 |
tgcttcaagatgctcaacttcgaccaccactcaagttcctgtctatcggaggagacatcacaacagcctaaaag-acctgagtcacaaaacttgctcccg |
4391651 |
T |
|
| Q |
402 |
acctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtcca |
500 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
4391650 |
accccgaatcaaaagcgattggcccacaagactcccgacacaaggcaaaaatgcacccctcaactcacgaaccaccagaacagacaccttaacctgacca |
4391551 |
T |
|
| Q |
501 |
aaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaac |
591 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| ||| |||| |||| |
|
|
| T |
4391550 |
aaacctcgacccaccaagaacccgatgccaaaatccaaagacagagaaaaggcggaatagtagcacaaagcaaaccatctcgaacataaac |
4391460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 204 - 421
Target Start/End: Original strand, 4397313 - 4397527
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |
|
|
| T |
4397313 |
aaaaaccaccagcaccctcaaaatgccgaatcccataacaac---tcctcaaagaaccaacaccgccaacaatgatcaattaggcacccgatagtgattt |
4397409 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4397410 |
tgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaacttactcccgaa |
4397509 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatc |
421 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4397510 |
ctcgaatcaaaagcgatc |
4397527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 428 - 558
Target Start/End: Original strand, 39908886 - 39909016
Alignment:
| Q |
428 |
aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatg |
527 |
Q |
| |
|
||||||| ||| ||||| |||||| ||||| ||||||||||||||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39908886 |
aagactcacgacacaagtcaaaaaagcacccctcaactcacgaaccaccagagcatacacctaaacctgtccaaaaactcgatccaccaataacccgatg |
39908985 |
T |
|
| Q |
528 |
ccaaaattcaaagacagagaaaaggcggaac |
558 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |
|
|
| T |
39908986 |
ccaaaatccaaagacagagaaaaggtggaac |
39909016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 608
Target Start/End: Complemental strand, 38564951 - 38564742
Alignment:
| Q |
395 |
gctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaac |
493 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||||| | |||| ||||| |||||| ||||||||||| ||||| || ||||||||| ||| |
|
|
| T |
38564951 |
gctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatcaaaa-ggcacccctcaactcacgacccatctgagcaaacacctaaac |
38564853 |
T |
|
| Q |
494 |
ctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaa |
593 |
Q |
| |
|
|||||| ||||||| |||||||| | || |||||| |||||| ||||| ||||| ||| |||| || ||| |||| | ||||||||| ||| ||||| |
|
|
| T |
38564852 |
ctgtcc--aaactcg-cccaccaaaatcctgatgcc-aaattcgaagacggagaacaggtggaatagcagcacaaaacgaaccagctcgaacctaaacat |
38564757 |
T |
|
| Q |
594 |
atcaaaacaagccac |
608 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
38564756 |
atgaaaacaagccac |
38564742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 532
Target Start/End: Complemental strand, 13987677 - 13987533
Alignment:
| Q |
389 |
aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac |
487 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| |||| ||| |||||| |||| || |||||||| ||||||||||||||| |||| || |||| |
|
|
| T |
13987677 |
aaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac |
13987578 |
T |
|
| Q |
488 |
cttaacctgtccaaaaactcgacccaccaataacccgatgccaaa |
532 |
Q |
| |
|
| ||||| || ||||||||| | |||||| |||| ||||||||| |
|
|
| T |
13987577 |
caaaacctatctaaaaactcggctcaccaaaaacctgatgccaaa |
13987533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 204 - 627
Target Start/End: Complemental strand, 16285306 - 16284884
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| || ||||||| |
|
|
| T |
16285306 |
aaaaaccaccatcaccctcaaaatgccaaa-cccctaacaacagttccttaaagaaccaacaccgccaacagtgattaattaggcacccgatagtgattt |
16285208 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
16285207 |
tgcttcaaatgttcagctttgaccaccactcaagttccggtttatcggaggagccgtcacaacagcctaaaaggacctgagtcgcaaacttgctcccgac |
16285108 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || || || |||||||||||| ||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
16285107 |
ctcgaatcaaaagcgatcggcccacaagactccagacactagtcaaaaaggcacccctcaactcacgaaccacaagagcagacaccttaacctgtccaaa |
16285008 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||||| |||||| || |||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
16285007 |
aactcgacccaccaatagctcgatgccaaaa-tcaaagacagcgaaaagacgaaacagtagtgcaaagtgaaccagctcgaacacaaacaaatcaaaaca |
16284909 |
T |
|
| Q |
603 |
agccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
|||||||| |||||||||| ||||| |
|
|
| T |
16284908 |
agccaccaaatcaacctgcatcacc |
16284884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 204 - 616
Target Start/End: Complemental strand, 45181835 - 45181422
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| || ||||| | |
|
|
| T |
45181835 |
aaaaaccaccaacaccttcaaaatgccaaaatccctaacaacagctcctcaaagaaccaacaccgccaacggtgatcaattaggcacttgatagtgatat |
45181736 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|| |||| ||| |||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45181735 |
tgattcagatgtttagcttcgaccaccacttaagttccggtctatcgaaggagacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgac |
45181636 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | ||| |||||||||||| ||||||||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
45181635 |
ctcgaatcaaaagcgattggcccacaagactcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacaccctaacctgtccaaa |
45181536 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| |||||| |||| ||||||||||| | ||||| ||| |||||||||||| |||| || |
|
|
| T |
45181535 |
aactcgacccaccaataacccaatgccaaaatccaaagacagaaaaaaggtggaatagtagcgcaaaacgaaccaactcgaacacaaacaaaacaaacca |
45181436 |
T |
|
| Q |
603 |
agccaccatatcaa |
616 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
45181435 |
agccaccaaatcaa |
45181422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 204 - 627
Target Start/End: Original strand, 17323997 - 17324422
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||| || ||||||| |
|
|
| T |
17323997 |
aaaaaccactagcaccctgaaaatgatgaatcccctgacaacaactcctcaaagaaccaacaccgccaacagtgatcaattcgacacctgatagtgattt |
17324096 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| | | ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17324097 |
tgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaatagcttaaaaggacctaagtcagaaacttgctcccgac |
17324196 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
||||||||||||| |||| |||| ||||||| ||| | ||| ||||||||||| ||||||||||||||| | || | |||||| ||||| |||||| |
|
|
| T |
17324197 |
ctcgaatcaaaagagatcggcccacaagactcacgacataagtaaaaaaggcacccctcaactcacgaaccaccggagtagacacctaaacctatccaaa |
17324296 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| | |||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
17324297 |
aactcgacccaccaataacccgatgtcaaaatccaaagacggggaaaaggcggaatagtagcacaaagcgaaccagctcgaacacaaacaaatcaaaaca |
17324396 |
T |
|
| Q |
603 |
agcc-accatatcaacctgcgtcacc |
627 |
Q |
| |
|
|||| |||| |||||||||| ||||| |
|
|
| T |
17324397 |
agccaaccaaatcaacctgcatcacc |
17324422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 23087753 - 23087591
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccc-taacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt |
302 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||| ||||||||| || ||||||||||| ||||||||||| ||||||||| |||| || || |||||| |
|
|
| T |
23087753 |
aaaaaccaccagcacccttaaaatgccgaatccccataacaacagctcatcaaagaaccatcaccgccaacaatgatcaattaggcatccgatagtgatt |
23087654 |
T |
|
| Q |
303 |
ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaa |
365 |
Q |
| |
|
|| |||||| |||||||||||||| | ||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
23087653 |
ttacttcaaacgttcagcttcgactatcactcaagttccgatctatcgaaggagacatcacaa |
23087591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 204 - 415
Target Start/End: Complemental strand, 29016720 - 29016508
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt |
302 |
Q |
| |
|
|||||||||||||||||||||| ||| | || |||||||||||| | ||||| ||||||||||| ||||| | |||||| |||||| || ||||| |
|
|
| T |
29016720 |
aaaaaccaccagcaccctcaaacatgccgaaacccctaacaacaactactcaaggaaccaacaccatcaacatagttcaattacgcacccgataatgatt |
29016621 |
T |
|
| Q |
303 |
ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaactt-gctcccg |
401 |
Q |
| |
|
| ||||||| | || ||||||||||||||||||| ||| |||||||||||||||||||| ||| | ||||||||||||| | ||||||| || |||| || |
|
|
| T |
29016620 |
t-gcttcaaacattgagcttcgaccaccactcaaattccggtctatcggaggagacatcccaaaaacctaaaaggaccttaatcacaaaattagctctcg |
29016522 |
T |
|
| Q |
402 |
acctcgaatcaaaa |
415 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29016521 |
acctcgaattaaaa |
29016508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 389 - 627
Target Start/End: Original strand, 2782094 - 2782333
Alignment:
| Q |
389 |
aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac |
487 |
Q |
| |
|
||||| |||||||| || ||||||||| |||| ||||| |||||| ||| |||| || |||||||| ||||||||| ||||| |||| || |||| |
|
|
| T |
2782094 |
aaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcagacac |
2782193 |
T |
|
| Q |
488 |
cttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacac |
587 |
Q |
| |
|
||||||||||||||||||||| ||||||| || | ||||||||| | ||| || |||||||| |||||| |||||||| | ||||||||| | || |
|
|
| T |
2782194 |
cttaacctgtccaaaaactcggcccaccattatctagatgccaaattcgtaagccaaagaaaaggtggaacaacagcgcaaatcgaaccagctcgagcat |
2782293 |
T |
|
| Q |
588 |
aaacaaatcaaaacaagccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
||||||| |||| ||||| || | ||||| |||| ||||| |
|
|
| T |
2782294 |
aaacaaaccaaatcaagctacaaaatcaaactgcatcacc |
2782333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 35571416 - 35571504
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcaccc |
292 |
Q |
| |
|
||||||||| || |||||||||||| | |||||||||| |||| |||||||||||| |||||||| || ||||||||| | ||||||| |
|
|
| T |
35571416 |
aaaaaccactagtaccctcaaaatgccgaatcccctaataacaactcctcaaagaactaacaccgcaaaaagtgatcaaatcggcaccc |
35571504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 208 - 603
Target Start/End: Complemental strand, 35847335 - 35846938
Alignment:
| Q |
208 |
accaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgct |
307 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||| || ||||||||||| |
|
|
| T |
35847335 |
accaccagcaccctcaaaatgtcgaatcccctaacaacaactcctcaaagaaccaacaccgccaacatttatcaattaggcacccgatagtgattttgct |
35847236 |
T |
|
| Q |
308 |
tcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcg |
407 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
35847235 |
tcaaacgttcagcttcgaccaccactcaagtcccggtctatcggaggagacatcacagcagcctaaaaggacccgagtcacaaacgtgctcccgacctcg |
35847136 |
T |
|
| Q |
408 |
aatcaaaagcgatcatccca-aagactcccgaaacaaggc-aaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaac |
505 |
Q |
| |
|
|||||||| ||||| |||| || |||||||| ||||| | ||||||||||| |||||||||| ||||| |||| || |||||||||| ||||||||||| |
|
|
| T |
35847135 |
aatcaaaatcgatcggcccacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacaccttaacatgtccaaaaac |
35847036 |
T |
|
| Q |
506 |
tcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaa |
603 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
35847035 |
ttgacccaccaataacccgatgccaaaatccaaagacaaagaaaaggtggaacaatagcataaagcgaaccagctcgaacacaaacaaatcaaaacaa |
35846938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 204 - 589
Target Start/End: Original strand, 42742178 - 42742561
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||| | | |||||| |
|
|
| T |
42742178 |
aaaaaccaccagcaccctcaaaatgctgaaacccctaacaacagctcctcaaagaaccaacaccgtgaacagtga-caattaggcacctgaag-tgattt |
42742275 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
| |||||| ||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42742276 |
tccttcaaacgtacaactttgaccaccactcaagttccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttgctcccgac |
42742375 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaa |
503 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||| |||| || |||||| ||||||| ||||| |
|
|
| T |
42742376 |
ctcgaatcaaaagcgatcgcccacaagactcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacctaaacctgttcaaaa |
42742475 |
T |
|
| Q |
504 |
actcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaa |
589 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||| ||| | ||||||||||| |
|
|
| T |
42742476 |
acttgacccaccaataacccgatgccaaaatccaaaaacagagaaaagttgaaacagtagcgcaaagccaactaactcaaacacaa |
42742561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 204 - 617
Target Start/End: Complemental strand, 29686068 - 29685654
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt |
302 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || |||||||||||| ||||||||||||||||||| |||||||| |||||| ||||| || ||| | |
|
|
| T |
29686068 |
aaaaaccaccagcatcctcaaacatgtcgaaacccctaacaacaactcctcaaagaaccaacaccatcaacagtggtcaattaagcacctgataatgact |
29685969 |
T |
|
| Q |
303 |
ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga |
402 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||||| |||||| | |||||||||| |||||||||||||| |||||||| |
|
|
| T |
29685968 |
ttgcttcaaacgttcagcttccaccaccacacaaattccggtctatcggaggagacttcacaaaagcctaaaaggatctgagtcacaaactagctcccga |
29685869 |
T |
|
| Q |
403 |
cctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaa |
501 |
Q |
| |
|
| |||||||||||| |||| |||| |||||||||| ||| | || |||| || ||||||||||||||| |||| || || ||||||||||| ||| |
|
|
| T |
29685868 |
cttcgaatcaaaagtgatcgacccattagactcccgacacaggtcattaaggtactcctcaactcacgaaccaccagagcagaccccttaacctgttcaa |
29685769 |
T |
|
| Q |
502 |
aaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaac |
601 |
Q |
| |
|
|||||| |||||||||||||| |||||||| | ||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
29685768 |
aaactcaacccaccaataaccatatgccaaattccaaagacagagaaaaggtggaacagtaacgcaaagtgaaccagctcgaacacaaac-aatcaaaac |
29685670 |
T |
|
| Q |
602 |
aagccaccatatcaac |
617 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
29685669 |
aagccacaaaatcaac |
29685654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 232 - 551
Target Start/End: Complemental strand, 3204495 - 3204173
Alignment:
| Q |
232 |
aatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccacca |
331 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||| | ||||||||| ||| |||||||||| |||||||| |
|
|
| T |
3204495 |
aatcccctaacaacaactcctcaaagaaccaacaccgtcaatagtgatcaaaaaggcactcggaaaagattttgctccaa-cgttcagctttgaccacca |
3204397 |
T |
|
| Q |
332 |
ctcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcga-tcatcccaaag |
430 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||| ||| | ||| ||| |
|
|
| T |
3204396 |
ctcaagttctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaaaacgattggtccacaag |
3204297 |
T |
|
| Q |
431 |
actcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacacc----ttaacctgtccaaaaactcgacccaccaataacccgat |
526 |
Q |
| |
|
||| | || ||||| ||||||||||| ||||||||||| ||| |||| || ||||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
3204296 |
act-ctgacacaagttaaaaaggcacccctcaactcacgagccaccagagcatacaccttaattaacctgaccaaaacctcgacccaccaataacccgat |
3204198 |
T |
|
| Q |
527 |
gccaaaattcaaagacagagaaaag |
551 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3204197 |
gccaaaattcaaagacagagaaaag |
3204173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 204 - 542
Target Start/End: Complemental strand, 2707303 - 2706963
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaa-atgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgatt |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||||| || |||||| | |||||||||| |||||||| ||||||| ||||||| | ||||| |
|
|
| T |
2707303 |
aaaaaccaccagcaccctcaaacatgtcgaaacccctaacaatagctcctcagataaccaacaccaccaacagtaatcaattaagcacccagtaatgatt |
2707204 |
T |
|
| Q |
303 |
ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga |
402 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| | ||| |||||||||||| ||| | ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2707203 |
ttgcttcaaacgttcagctttgaccaccactcaagttacgatctttcggaggagacaatgcaaaagcctaaaaggacatgagtcacaaactagctcccga |
2707104 |
T |
|
| Q |
403 |
cctcgaatcaaaagcgatc-atcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaa |
501 |
Q |
| |
|
|||||||||||||| |||| | | |||||||||| ||||| || || ||||| ||||||||||||||| | || || ||||||||||||||||| |
|
|
| T |
2707103 |
cctcgaatcaaaagtgatcggttcactagactcccgacacaagtcattaaagcacccctcaactcacgaaccaccggagcaggcaccttaacctgtccaa |
2707004 |
T |
|
| Q |
502 |
aaactcgacccaccaataacccgatgccaaaattcaaagac |
542 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| | ||||||| |
|
|
| T |
2707003 |
gaactcggcacaccaataaccagatgccaaattccaaagac |
2706963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 204 - 400
Target Start/End: Complemental strand, 25362514 - 25362318
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || | ||||| |
|
|
| T |
25362514 |
aaaaaccaccatcaccctcaaaatgttgaatcccctaacaacaactcctcaaagaactaacaccgccaacagtgatcaattaggcacccgatagagattt |
25362415 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctccc |
400 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25362414 |
tgcttcaaacgttcagcttcaatcaccactcaagttccggtctatcaatggagacatcacaacagcctaaaaggacctgagtcacaaacttgctccc |
25362318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 204 - 474
Target Start/End: Complemental strand, 39369102 - 39368832
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||||||||||||| ||||| ||||||||||| ||||||||||||| ||| ||||||| | | ||| | |
|
|
| T |
39369102 |
aaaaaccattagcactctcaaaatgccaaaacccctaacaacagctcctccaagaaccaacatcgccaacagtgataaataaggcacccgaag-tgacat |
39369004 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | |||| | ||||||||| ||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
39369003 |
tgcttcaaacgttcagcttcgaccaccactcacgtcccggtcgcactgaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgac |
39368904 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaacca |
474 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
39368903 |
ctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagacacctctcaactcacgaacca |
39368832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 204 - 338
Target Start/End: Complemental strand, 17218956 - 17218822
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
17218956 |
aaaaaccaccagcaccctcaaaatgccgaataccctaacaacaactcatcaaagaaccaacaccgccaacagtgaacaattaggcacccaatagtgattt |
17218857 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
17218856 |
tgcttcaaaagttcagcttcgaccaccactcaagt |
17218822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 40377781 - 40377649
Alignment:
| Q |
259 |
accaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagac |
358 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| |||||||| |||||| ||||||| ||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
40377781 |
accaacaccgccaacagtgatcaattaggtcctcaatagtgattttacttcaaacgttcaggttccaccaccactcaagatccggtctatcggaggagac |
40377682 |
T |
|
| Q |
359 |
atcacaacatcctaaaaggacctgagtcacaaa |
391 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
40377681 |
atcacaacagcctaaaaggacctgagtcacaaa |
40377649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 608
Target Start/End: Complemental strand, 18557577 - 18557376
Alignment:
| Q |
404 |
ctcgaatcaaaagcgatcatcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaa |
503 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||| |||| ||||| |||||| ||||||||||| ||| |||| | ||||||||||||| || || |
|
|
| T |
18557577 |
ctcgaatcaaaagtgatcggcccatagactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtagacaccttaacctgccc--aa |
18557480 |
T |
|
| Q |
504 |
actcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaa |
603 |
Q |
| |
|
||||| |||||||||| ||| ||||| ||| || |||||| |||||||| |||||| |||||||| | | ||||||| |||| |||||| ||| |||| |
|
|
| T |
18557479 |
actcggcccaccaatatcccaatgcc-aaactcgaagacaaagaaaaggtggaacaacagcgcaaatcgatccagctcgaacaacaacaaaccaacacaa |
18557381 |
T |
|
| Q |
604 |
gccac |
608 |
Q |
| |
|
||||| |
|
|
| T |
18557380 |
gccac |
18557376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 313 - 627
Target Start/End: Complemental strand, 25341831 - 25341517
Alignment:
| Q |
313 |
cgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatc |
411 |
Q |
| |
|
||||||||||| ||||||| |||| ||| |||| |||||||||||||||||| | |||||||||||||| |||| ||| || ||| | | ||| |||| |
|
|
| T |
25341831 |
cgttcagcttctaccaccaatcaacttccggtcagtcggaggagacatcacaaaagcctaaaaggacctgtgtcaaaaatctaactctcaatctcaaatc |
25341732 |
T |
|
| Q |
412 |
aaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgac |
510 |
Q |
| |
|
||||| |||| |||| |||||||||| ||| || |||||||| | |||||||||| || |||| || | |||||||| |||| ||||| ||| | |
|
|
| T |
25341731 |
aaaagtgatcggcccaccagactcccgacacacatcatcaaggcacccctgaactcacgaagcaccagagcagaaaccttaacatgtcgaaaaattcggc |
25341632 |
T |
|
| Q |
511 |
ccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccacca |
610 |
Q |
| |
|
| || || || ||||||||| | | |||||| | |||| | ||||| ||||||||| | ||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
25341631 |
gcgcctttatccagatgccaaattcctaagacatataaaa-gttgaacaatagcgcaaa-cgaaccagctcgagcacaaacaaatcaaaacaagccacaa |
25341534 |
T |
|
| Q |
611 |
tatcaacctgcgtcacc |
627 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
25341533 |
aattaacctgcatcacc |
25341517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 204 - 375
Target Start/End: Original strand, 2334583 - 2334755
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaag-aaccaacaccgccaa-cagtgatcaatttggcacccaatggtgat |
301 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||| || ||||||||| ||||||||||||||| ||||||||||| | || || || ||||| |
|
|
| T |
2334583 |
aaaaaccaccaacaccctcaaaatgctgaaacccctaacagtagctcctcaaagaaaccaacaccgccaatgagtgatcaattagacatccgatagtgat |
2334682 |
T |
|
| Q |
302 |
tttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaa |
375 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
2334683 |
aatgcttccaacgcacagcttcgaccaccactcaagtttcggtaactc-gaggagacatcacaacagcctaaaa |
2334755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 39368815 - 39368731
Alignment:
| Q |
541 |
acagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||| | |||| ||| ||||| |
|
|
| T |
39368815 |
acagagaaaaggcggaacaaaagcgcacagcaaaccagctcgaacacaaac--atcaaaacaagccaccaaaacaacttgcatcacc |
39368731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 1223125 - 1223089
Alignment:
| Q |
238 |
ctaacaacagttcctcaaagaaccaacaccgccaaca |
274 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |
|
|
| T |
1223125 |
ctaacaatagctcctcaaagaaccaacaccgccaaca |
1223089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 204 - 621
Target Start/End: Original strand, 26500115 - 26500537
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| | ||| |||||| || |||||| |
|
|
| T |
26500115 |
aaaaaccaccaagaccctcaaaatgctgaatcccctaacaacagctcctcaaagaaccaacaccaccaacagtggtgaataaagcacccgatattgattt |
26500214 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26500215 |
tgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgac |
26500314 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtcc--a |
500 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| ||||| |||||||||||| ||||||||||||||| ||| || |||||||||||||||| | |
|
|
| T |
26500315 |
ctcgaatcaaaagcgatcgacccacaagacttccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctgtccaaa |
26500414 |
T |
|
| Q |
501 |
aaaactcgacc--caccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaa |
598 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| || |||||| |||| ||||||||||| |
|
|
| T |
26500415 |
aaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaatcagctcgaacaaaaacaaatcaa |
26500514 |
T |
|
| Q |
599 |
aacaagccaccatatcaacctgc |
621 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
26500515 |
aacaagccaccaaatcaacctgc |
26500537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 204 - 589
Target Start/End: Complemental strand, 1799395 - 1799001
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtca-aatcccctaacaacagttcctcaaagaaccaacaccgcc-------aacagtgatcaatttggcacccaat |
295 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||| || |
|
|
| T |
1799395 |
aaaaaccaccagcaccctcaaaaaaactgaaacccctaacaacagctcctcaaagaaccaacactgccgtctgccaacagtgatcaaaaaggcacccgat |
1799296 |
T |
|
| Q |
296 |
ggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttg |
395 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||| || |||| |||||||||||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
1799295 |
aatgatgttgcttcaaacgatcagcttcgaccaccactcaaattttggtttatcggaggagacatcacaatagcctaaaaggacctgagacacaaacttg |
1799196 |
T |
|
| Q |
396 |
ctcccgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacc |
494 |
Q |
| |
|
|||| ||||| |||||||||||| | | | |||||||| | ||||| |||||||||||| ||||||||||||||| | || || ||||||||||| |
|
|
| T |
1799195 |
ctcctgacctagaatcaaaagcgtttggtcaacaagactccttacacaagtcaaaaaggcacccctcaactcacgaaccaccggagcagacaccttaacc |
1799096 |
T |
|
| Q |
495 |
tgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaa |
589 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
1799095 |
tatccaaaaactcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggcagaacaatagcgcaaagtgaaccagctcgaacacaa |
1799001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 300 - 571
Target Start/End: Complemental strand, 10388706 - 10388434
Alignment:
| Q |
300 |
attttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcc |
399 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10388706 |
attttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaaggacctgagtcataaacttgctcc |
10388607 |
T |
|
| Q |
400 |
cgacctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtc |
498 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||| ||| |||| ||||||| || | |||||||||||| || ||| || ||||||| || |||| |
|
|
| T |
10388606 |
cgacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagacatccctcaactcacgaagcactagagcagacacctttacatgtc |
10388507 |
T |
|
| Q |
499 |
caaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagc |
571 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10388506 |
ccaaaacttgacccatcaataacccgatgccaaaatccaaagagagagaaaaggcggaacagtagcgcaaagc |
10388434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 301 - 608
Target Start/End: Original strand, 17416446 - 17416754
Alignment:
| Q |
301 |
ttttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctccc |
400 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||| | | | ||||| ||||| |
|
|
| T |
17416446 |
ttttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcct |
17416545 |
T |
|
| Q |
401 |
gacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtcc |
499 |
Q |
| |
|
|| ||||||||||||| |||| |||| || ||| ||| || | || ||||||| ||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
17416546 |
gatctcgaatcaaaagtgatcggcccactaggctctcgacaccaatcatttaggcacccctcaactcacgaaccactagagtagacaccttaacctgtcc |
17416645 |
T |
|
| Q |
500 |
aaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaa |
599 |
Q |
| |
|
||||||||| ||||| | |||| |||||||| | | ||||||||||||||| | |||| ||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
17416646 |
aaaaactcggcccacaataaaccaaatgccaaattcctaagacagagaaaaggtgaaacaatagcgcaaagcgaaccagctcgaacacaaacaaatcaaa |
17416745 |
T |
|
| Q |
600 |
acaagccac |
608 |
Q |
| |
|
||||||||| |
|
|
| T |
17416746 |
acaagccac |
17416754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 23040625 - 23040744
Alignment:
| Q |
485 |
caccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaa |
584 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| || ||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||| || |
|
|
| T |
23040625 |
caccttaacctgtctaaaaactcgaccctccaaaaatccgatgccaaaatccatagacagagaaaagacggaacagtagcgcaaagcgaaccagctcgaa |
23040724 |
T |
|
| Q |
585 |
cacaaacaaatcaaaacaag |
604 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
23040725 |
cacaaataaatcaaaacaag |
23040744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 600
Target Start/End: Original strand, 40813785 - 40814017
Alignment:
| Q |
369 |
cctaaaaggacctgagtcacaaacttg-ctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc |
466 |
Q |
| |
|
|||||||| |||||||||| ||| ||| ||||||| ||||||||||||| |||| |||| |||||||||| ||| || ||||||||| |||| || |
|
|
| T |
40813785 |
cctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacccttcaattc |
40813884 |
T |
|
| Q |
467 |
acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgc |
566 |
Q |
| |
|
|||||||| ||| || |||||||||||| |||||||||||| ||||||| |||| |||||| |||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
40813885 |
acgaaccactagagcagacaccttaacctatccaaaaactcggcccaccataaaccagatgcc-aaattcgaaggcagagaaaaggtggaacagtagcgc |
40813983 |
T |
|
| Q |
567 |
aaagcaaaccagctcaaacacaaacaaatcaaaa |
600 |
Q |
| |
|
||| | ||||||||| || | ||||||| ||||| |
|
|
| T |
40813984 |
aaaacgaaccagctcgaatataaacaaaccaaaa |
40814017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 404 - 618
Target Start/End: Original strand, 37707395 - 37707607
Alignment:
| Q |
404 |
ctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||| ||| ||||||||||||| ||||||||||||||| |||| || ||||| || || |||||| |
|
|
| T |
37707395 |
ctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatccaaa |
37707494 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
||||||||||||||| |||| |||||| || |||||||| ||| | || |||| ||||| |||| | | ||||||| |||| |||||||||||| || |
|
|
| T |
37707495 |
aactcgacccaccaaaaaccagatgcc-aagctcaaagac--agacacggtggaatagtagtacaaatcgatccagctcgaacagaaacaaatcaaacca |
37707591 |
T |
|
| Q |
603 |
agccaccatatcaacc |
618 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
37707592 |
agccacaaaatcaacc |
37707607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 6760933 - 6760853
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatt |
284 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||| || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6760933 |
aaaaaccaccagcatcctcaaaatgctgaaacccctaacaatagctcatcaaagaaccaacaccgccaacagtgatcaatt |
6760853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 204 - 610
Target Start/End: Original strand, 37128763 - 37129170
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||| || ||||||| |
|
|
| T |
37128763 |
aaaaaccaccagcaccctcaaaatgccgaatcccctaaaaacagctcctcaaagaaccaacaccgccaacaatgatgaattaggcacccgatagtgattt |
37128862 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| |
|
|
| T |
37128863 |
tgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaacatcctgaaaggacttgagtcacaaacttgttccggac |
37128962 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||||||||||||||| |||| || |||||| |||||||||||| |
|
|
| T |
37128963 |
ctcgaatcaaaagcgatcggcccacaagactcctaacacaagtcaaaaaggcacctatcaactcacgaaccaccagagcagacacctgaacctgtccaaa |
37129062 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
||||| ||| ||||| || |||||| |||||| |||||||||| |||||||||||||||||||| || | ||||||||| |||||||||||||||||| | |
|
|
| T |
37129063 |
aactcaaccaaccaaaaatccgatgtcaaaatccaaagacagaaaaaaggcggaacagtagcgccaaacgaaccagctcgaacacaaacaaatcaaaata |
37129162 |
T |
|
| Q |
603 |
agccacca |
610 |
Q |
| |
|
| |||||| |
|
|
| T |
37129163 |
atccacca |
37129170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 303 - 627
Target Start/End: Original strand, 4397369 - 4397692
Alignment:
| Q |
303 |
ttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccga |
402 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4397369 |
ttgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccga |
4397468 |
T |
|
| Q |
403 |
cctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaa |
501 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| | ||| ||||| |||||| ||||||||||||||| || | || |||| | ||| ||||||| |
|
|
| T |
4397469 |
cctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggcacccctcaactcacgaaccaccatagcagacacataaacttgtccaa |
4397568 |
T |
|
| Q |
502 |
aaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaac |
601 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
4397569 |
aaactcgacccaccaataactctatgccaaaatccaaagacagag-aaaggcggaacagtagcgcaaagcgaa-cagctcgaacacaaacaaatcaaaac |
4397666 |
T |
|
| Q |
602 |
aagccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
||||||||| |||||||||| ||||| |
|
|
| T |
4397667 |
aagccaccaaatcaacctgcatcacc |
4397692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 219 - 576
Target Start/End: Complemental strand, 41958458 - 41958100
Alignment:
| Q |
219 |
cctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttca |
318 |
Q |
| |
|
|||||||||| | ||||||||||||||| | ||||||||||||||| ||||||||||||| |||| ||| ||| || ||||||||| ||||| ||||| |
|
|
| T |
41958458 |
cctcaaaatgccgaatcccctaacaacaacttctcaaagaaccaacatcgccaacagtgatgaattaggcgcccgatagtgattttgtttcaaatgttca |
41958359 |
T |
|
| Q |
319 |
gcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcg |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
41958358 |
gcttcgaccaccactcaagtttcggtctatcagaggagacgttacaacagactaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagtg |
41958259 |
T |
|
| Q |
419 |
atcatcccaaagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccacca-- |
516 |
Q |
| |
|
|| || |||||||| || ||||| |||||||||||| ||||||||| ||||| |||| || ||||||||||||||||||||| | ||||| || |
|
|
| T |
41958258 |
gtcggccacaagactcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacaccttaacctgtccaaaaatccaacccatcaat |
41958159 |
T |
|
| Q |
517 |
ataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaacc |
576 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
41958158 |
ataacccgatgccaaaatccgaagacagag-aaaggtagaacattagcgcaaagcgaacc |
41958100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 343 - 617
Target Start/End: Original strand, 42048194 - 42048470
Alignment:
| Q |
343 |
gtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcatcccaaag-actcccgaaa |
440 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||| ||||||| ||| || ||||||| ||||||||||||| ||||| |||| | |||||||| | |
|
|
| T |
42048194 |
gtctatcggaggagacatccatatagcctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagcccatcggactcccgaca |
42048293 |
T |
|
| Q |
441 |
caaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaag |
540 |
Q |
| |
|
|| ||| ||||||||| ||||||||||||||| |||| || |||||||||| |||||||||||||| ||||||| || || || |||||| | | ||| |
|
|
| T |
42048294 |
gaaatcaacaaggcacctctcaactcacgaaccaccagagcagacaccttaacatgtccaaaaactcggcccaccattatccagaggccaaattcctaag |
42048393 |
T |
|
| Q |
541 |
acagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaac |
617 |
Q |
| |
|
|||||| |||| |||||| | ||||| | ||||||||| |||| ||||||| ||||||||||||| | |||||| |
|
|
| T |
42048394 |
acagagggaaggtggaacaacaatgcaaatcgaaccagctcgaacataaacaaaccaaaacaagccacaaaatcaac |
42048470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 4161968 - 4162077
Alignment:
| Q |
314 |
gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaa-catcctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatc |
411 |
Q |
| |
|
|||||| ||||||||||| |||| |||| |||| |||||| ||||| || || | ||||||| ||||||| ||| ||| || |||||||| |||||||| |
|
|
| T |
4161968 |
gttcagattcgaccaccaatcaacttctagtctgtcggagaagacaccaaaataagcctaaaaagacctgactcaaaaagctggctcccgatctcgaatc |
4162067 |
T |
|
| Q |
412 |
aaaagcgatc |
421 |
Q |
| |
|
||||| |||| |
|
|
| T |
4162068 |
aaaagtgatc |
4162077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 204 - 603
Target Start/End: Complemental strand, 38388159 - 38387759
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| || ||||||| |
|
|
| T |
38388159 |
aaaaaccaccagcaccctcaaaatgccgaaacccctaacaacaactcctcgaagaaccaacaccatcaacagtgatcaattaggcacccgatagtgattt |
38388060 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||| || |||||||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38388059 |
tgcttcaaacgttcagcttcgaccaccactcaagtcctagtctatcagatgagacatcacaatagcctaaaaggacctgagtcacaaacttgctcctgac |
38387960 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaa |
502 |
Q |
| |
|
|| |||||||||| ||| |||| ||||||||||| | ||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
38387959 |
cttgaatcaaaagtgattggcccacaagactcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacaccttaacctgtccaaa |
38387860 |
T |
|
| Q |
503 |
aactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||| |||||||| | |||||| ||| ||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
38387859 |
aactcgacccaccaataacctgatggcaaaatccaaagatagagaaaatggggaacaatagtgcaaagcgaaccagctcgaacacaaacaaaacaaaaca |
38387760 |
T |
|
| Q |
603 |
a |
603 |
Q |
| |
|
| |
|
|
| T |
38387759 |
a |
38387759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 204 - 627
Target Start/End: Original strand, 46066 - 46492
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||| | ||||| ||||||||| | | || || ||||||| |
|
|
| T |
46066 |
aaaaaccactagcaccctgaaaatgatgaatcccctaacaacaactcctcaaagaaccaacactgtcaacaatgatcaattcgacgcctgatagtgattt |
46165 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46166 |
tgcttcaaacgttcaactttgaccaccactcaagttccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaacttgctcccgac |
46265 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaa-ccatcagaacaaacaccttaacctgtccaa |
501 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||| ||||| |||||||||||| |||||||||||| ||| | || || |||| | ||||||||||| |
|
|
| T |
46266 |
ctggaatcaaaagcgattggcccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaacccaccggagcagacacataaacctgtccaa |
46365 |
T |
|
| Q |
502 |
aaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaac |
601 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||| |||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
46366 |
aaactcgacccaccaataacccgatgtcaaaatccaaagacaaagaataggcggaacagtagcacaaagcgaaccggctcgaacacaaacaaatcaaaac |
46465 |
T |
|
| Q |
602 |
aagcc-accatatcaacctgcgtcacc |
627 |
Q |
| |
|
||||| |||| |||||||||| ||||| |
|
|
| T |
46466 |
aagccaaccaaatcaacctgcatcacc |
46492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 204 - 615
Target Start/End: Complemental strand, 1579380 - 1578970
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
||||||||||| ||||||||| || | || |||||||||| | || ||||||||||| |||| |||||| || ||| ||||||||| || || |
|
|
| T |
1579380 |
aaaaaccaccatcaccctcaagctgccgaaacccctaacaaaaactcatcaaagaacca-caccaccaacaatggacaaccaagcacccaataacgaatt |
1579282 |
T |
|
| Q |
304 |
tgcttcaagc-gttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaa-acttgctcccg |
401 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || |||||| | |||||||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1579281 |
tgcttcaagatgctcagcttcgaccaccactcaagtttcggcctatcgcaagagacatcacaacaacctagaaggacctgagtcacaagacttgctcccg |
1579182 |
T |
|
| Q |
402 |
acctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtcca |
500 |
Q |
| |
|
|| | |||||||||| |||| |||| ||||||||| | ||||| ||| ||||| | ||||||||||||||| |||| || |||||| ||||| |||| |
|
|
| T |
1579181 |
actttgaatcaaaagtgatcggcccacaagactcccaacacaagtaaaagaggcatccctcaactcacgaaccaccagagcagacacctaaacctatcca |
1579082 |
T |
|
| Q |
501 |
aaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaa |
600 |
Q |
| |
|
||| || ||||| |||| ||| |||||||||||| ||||||||||||| | || ||| ||||||||||||| || || ||| ||||||||| ||||| |
|
|
| T |
1579081 |
aaaccttgacccgccaagaacacgatgccaaaatccaaagacagagaacaagcagaatagtagcgcaaagcgaatcaactcgaacacaaac---tcaaat |
1578985 |
T |
|
| Q |
601 |
caagccaccatatca |
615 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
1578984 |
caagccaccaaatca |
1578970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 249 - 393
Target Start/End: Original strand, 4489610 - 4489754
Alignment:
| Q |
249 |
tcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctat |
348 |
Q |
| |
|
||||||||||||||||||| |||| |||| | |||| |||| | || |||||||||||||| |||| |||||| |||||||||||||||| |||||| |
|
|
| T |
4489610 |
tcctcaaagaaccaacaccaccaatagtgttaaattaagcactcgataatgattttgcttcaaacgtttagcttctaccaccactcaagttccagtctat |
4489709 |
T |
|
| Q |
349 |
cggaggagacatcacaacatcctaaaaggacctgagtcacaaact |
393 |
Q |
| |
|
||||||||||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
4489710 |
cggaggagacatcacaaaagcctaaaaggatccgagttacaaact |
4489754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 22916008 - 22915928
Alignment:
| Q |
269 |
ccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttctggtctatc |
349 |
Q |
| |
|
|||||| |||||||||||||| || || |||| |||||||||| |||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
22916008 |
ccaacactgatcaatttggcatccgatagtgaatttgcttcaaacgttcagcttcgactaccactcaatttccggtctatc |
22915928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 627
Target Start/End: Original strand, 31179995 - 31180088
Alignment:
| Q |
533 |
attcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgcgtcacc |
627 |
Q |
| |
|
|||||||| ||||||||||| ||| || ||||| ||| | || ||||| |||||||||||| |||||||||||| | |||||||||| ||||| |
|
|
| T |
31179995 |
attcaaaggcagagaaaaggtggagcaatagcgaaaatcgaaacagcttgaacacaaacaaa-caaaacaagccatgaaatcaacctgcatcacc |
31180088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 204 - 455
Target Start/End: Complemental strand, 6003615 - 6003363
Alignment:
| Q |
204 |
aaaaaccaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattt |
303 |
Q |
| |
|
|||||||||||||||||||| || | | || | ||||||||||| ||||||||||||||||||||||||||||||| || |||||| || |||| | |
|
|
| T |
6003615 |
aaaaaccaccagcaccctcacaaagccgaaactcctaacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatattgatgt |
6003516 |
T |
|
| Q |
304 |
tgcttcaagcgttcagcttcgaccaccactcaagttctggtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgac |
403 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
6003515 |
tgcttcaaacgttcagcttcgaccaccactcaagtttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgcttccgac |
6003416 |
T |
|
| Q |
404 |
ctcgaatcaaaagcgatcatccca-aagactcccgaaacaaggcaaaaaggca |
455 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || |||| |||||||||| |
|
|
| T |
6003415 |
ctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggca |
6003363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 397 - 603
Target Start/End: Complemental strand, 2570208 - 2570002
Alignment:
| Q |
397 |
tcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacct |
495 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||| || ||||| |||||||||||| ||||||||||| | | |||| |||||||||||| || |
|
|
| T |
2570208 |
tcccgacctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacaccttaatct |
2570109 |
T |
|
| Q |
496 |
gtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaat |
595 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
2570108 |
gaccaaaacctcgacccaccaataacccgatgccaaaatccaaagacagagaaaaggcggatcagtagcacaaagcgaaccagctcgaacac-aacaaat |
2570010 |
T |
|
| Q |
596 |
caaaacaa |
603 |
Q |
| |
|
|| ||||| |
|
|
| T |
2570009 |
cacaacaa |
2570002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 2570553 - 2570409
Alignment:
| Q |
208 |
accaccagcaccctcaaaatgtcaaatcccctaacaacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgct |
307 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
2570553 |
accaccagcacccccaaaatgctaaatctcctaacaacaacacctcaaagaaccaacaccgccaacagtgatcaaaaaggcacccgaaagtgattttgct |
2570454 |
T |
|
| Q |
308 |
tcaagcgttcagcttcgaccaccactcaagttctggtctatcgga |
352 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2570453 |
tcaaaggttcagcttcgaccaccactcaagtgttggtatatcgga |
2570409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 369 - 516
Target Start/End: Original strand, 27993540 - 27993689
Alignment:
| Q |
369 |
cctaaaaggacctgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc |
466 |
Q |
| |
|
|||||||| ||||| |||| ||| || |||||||| ||||||||||||| |||| ||| |||||||||| |||| || |||| |||| ||||||| |
|
|
| T |
27993540 |
cctaaaagaacctgcgtcagaaaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactc |
27993639 |
T |
|
| Q |
467 |
acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccacca |
516 |
Q |
| |
|
|||||||| |||| |||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
27993640 |
acgaaccaccagagcaaacaccataacctatccaaaaactcggcccacca |
27993689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 369 - 603
Target Start/End: Original strand, 46262123 - 46262357
Alignment:
| Q |
369 |
cctaaaaggacctgagtcac-aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactc |
466 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||| ||||||||||||| |||| |||| |||||||| | || | |||||||||||| ||||||| |
|
|
| T |
46262123 |
cctaaaagaaccagagtcaagaaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctcaactc |
46262222 |
T |
|
| Q |
467 |
acgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgc |
566 |
Q |
| |
|
||||| || | || | ||||| ||| || |||||||||||| |||||||| | || ||||||||| | |||||||| || || ||||||||||| | |
|
|
| T |
46262223 |
acgaatcaccggagaagacaccataaactatccaaaaactcggcccaccaaaacccagatgccaaattgataagacaga--aacggtggaacagtagctc |
46262320 |
T |
|
| Q |
567 |
aaagcaaaccagctcaaacacaaacaaatcaaaacaa |
603 |
Q |
| |
|
||| | | |||||||||||| ||||||| |||||||| |
|
|
| T |
46262321 |
aaatcgatccagctcaaacaaaaacaaaccaaaacaa |
46262357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 594
Target Start/End: Original strand, 35206718 - 35206921
Alignment:
| Q |
389 |
aaacttgctcccgacctcgaatcaaaagcgatcatcccaa-agactcccgaaacaaggcaaaaaggcacctatcaactcacgaaccatcagaacaaacac |
487 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||| |||| |||||||| | |||| ||||||| ||| |||||||| || ||| |||| || |||| |
|
|
| T |
35206718 |
aaactagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcagacac |
35206817 |
T |
|
| Q |
488 |
cttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagctcaaacac |
587 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| ||| |||||||| | |||||||||||||||| |||||| || ||||| | | ||||||| |||| |
|
|
| T |
35206818 |
cttaacttgtccaaat--tcggcccaccaatatcccaatgccaaact-caaagacagagaaaagatggaacaacagtgcaaaccgatccagctcgaacaa |
35206914 |
T |
|
| Q |
588 |
aaacaaa |
594 |
Q |
| |
|
||||||| |
|
|
| T |
35206915 |
aaacaaa |
35206921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 594
Target Start/End: Complemental strand, 25153193 - 25153081
Alignment:
| Q |
481 |
caaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaaaggcggaacagtagcgcaaagcaaaccagct |
580 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || | |||||| ||||||| | ||| |||| ||| ||||||| | || ||| |||||||| |
|
|
| T |
25153193 |
caaacaccttaacctgtccaaaaactcggaccaccattattcagatgcc-aaattcataaacatagaataggtggaacagcaacgtaaattgaaccagct |
25153095 |
T |
|
| Q |
581 |
caaacacaaacaaa |
594 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
25153094 |
cgaacataaacaaa |
25153081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 450 - 608
Target Start/End: Complemental strand, 12129212 - 12129057
Alignment:
| Q |
450 |
aaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattcaaagacagagaaa |
549 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| | |||||| ||| |||||||| |||| ||||||| || |||||||||||| ||| ||||| |||||| |
|
|
| T |
12129212 |
aaggcacccatcaactcacgacccaccagagaagacacctaaacttgtccaaa--ctcggcccaccattatcccgatgccaaa-ttcgaagacggagaaa |
12129116 |
T |
|
| Q |
550 |
aggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccac |
608 |
Q |
| |
|
||| |||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
12129115 |
aggtggaacagtggcgcaaatcaaaccagctcgaacaaaaacaaatcaaaacaagccac |
12129057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 447 - 602
Target Start/End: Original strand, 7546513 - 7546665
Alignment:
| Q |
447 |
aaaaaggcacctatcaactcacgaaccatcagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaaattca-aagacaga |
545 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || ||||| |||||| ||||||||||||||||| ||| | || ||||| ||||||| ||||| | |
|
|
| T |
7546513 |
aaaaaggcacccctcaactcacgaaccaccagagcagacaccataacctatccaaaaactcgaccca-caaaacccatatgcc-aaattcataagac--a |
7546608 |
T |
|
| Q |
546 |
gaaaaggcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaaca |
602 |
Q |
| |
|
|||| || |||||| ||||||||| | | |||||||||||| ||||||| ||||||| |
|
|
| T |
7546609 |
gaaacggtggaacaatagcgcaaatcgatccagctcaaacagaaacaaaccaaaaca |
7546665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 118 times since January 2019
Visitors: 5831