View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_60 (Length: 306)

Name: NF0818_low_60
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_60
NF0818_low_60
[»] chr2 (2 HSPs)
chr2 (6-277)||(17895712-17895983)
chr2 (95-166)||(43585945-43586016)
[»] chr6 (2 HSPs)
chr6 (76-166)||(785384-785474)
chr6 (100-160)||(1334714-1334774)
[»] chr5 (2 HSPs)
chr5 (108-167)||(7621169-7621228)
chr5 (129-165)||(9031879-9031915)
[»] chr4 (2 HSPs)
chr4 (76-166)||(37496744-37496834)
chr4 (95-163)||(13307925-13307993)
[»] chr8 (1 HSPs)
chr8 (130-167)||(10497744-10497781)
[»] chr7 (1 HSPs)
chr7 (95-168)||(25956493-25956565)
[»] chr1 (1 HSPs)
chr1 (99-163)||(16925683-16925747)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 17895983 - 17895712
Alignment:
Q  6 aggagcacagacactgaacacgacactgatacgttcgtacggataaaattttaagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtc 105  Q
    |||| |||||||||||||||||||||||||||     ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17895983 aggatcacagacactgaacacgacactgatacacctataccgataaaattttgagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtc 17895884  T
Q  106 gaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagccttcaagttgtcgagacagaccccattcttgccttgga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  17895883 gaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgtccatgcaacagagccttcaagttgtcgagacagaccccaagcttgccttgga 17895784  T
Q  206 aacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaat 277  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895783 aacttgtgtcacaaatcgacaagcagattgttcatcccagtgctttacctgattgctgtaattactttcaat 17895712  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 43586016 - 43585945
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    |||| ||||||| |||||||||||||| || |   |||||| |||||||||| |||||||||||||||||||    
T  43586016 gtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 785474 - 785384
Alignment:
Q  76 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    ||||||||||| || ||| |||| ||||||||||| |||  |||||||| |  ||||||| |||||||||| |||||| ||||||||||||    
T  785474 aatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 1334714 - 1334774
Alignment:
Q  100 ggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgca 160  Q
    ||||||||||||||| ||||||| | |  ||||||| |||||||||| |||||| ||||||    
T  1334714 ggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 7621228 - 7621169
Alignment:
Q  108 acacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagc 167  Q
    ||||||||| | ||||| || |||||||| ||||||||| |||||| |||||||||||||    
T  7621228 acacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagc 7621169  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 9031915 - 9031879
Alignment:
Q  129 aggacacgccttcaatcaaaagtgttcgtgcaacaga 165  Q
    |||||||||||||||||| |||||| |||||||||||    
T  9031915 aggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 37496744 - 37496834
Alignment:
Q  76 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    ||||||||||| || ||| |||| | || || |||||| || ||||||| |   ||||||||||||||||| |||||| ||||||||||||    
T  37496744 aatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 13307925 - 13307993
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 163  Q
    |||||||||||| |||||| ||||||| || |  | |||| ||||||||||| ||||||| ||||||||    
T  13307925 gtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 10497781 - 10497744
Alignment:
Q  130 ggacacgccttcaatcaaaagtgttcgtgcaacagagc 167  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10497781 ggacacgccttcaatcagaggtgttcgtgcaacagagc 10497744  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 25956493 - 25956565
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagcc 168  Q
    |||| ||||||| ||||||||| ||||||| |   ||||||||||||||||| |||||| ||||||| ||||||    
T  25956493 gtgtcggtgtcggacacgatacatgtcggacacg-ggacacgccttcaatcagaagtgtccgtgcaatagagcc 25956565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 16925683 - 16925747
Alignment:
Q  99 tggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 163  Q
    |||||||| ||||||||||||||||| |  || |||| |||||||| |||||||| | |||||||    
T  16925683 tggtgtcgcacacgatacgtgtcggacaccagaacactccttcaattaaaagtgtccatgcaaca 16925747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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