View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_low_65 (Length: 301)
Name: NF0818_low_65
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_65 |
 | |
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| [»] scaffold0038 (2 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28525244 - 28525384
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28525244 |
gaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgta |
28525343 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaatta |
141 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
28525344 |
acaacctcccttccattgctctctgtttttctaataaatta |
28525384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28246374 - 28246512
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| ||||| |||||| |||||||| | |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
28246374 |
gaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgta |
28246473 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28246474 |
acaagctcccttccatggctctctgtttttctactaaat |
28246512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28239396 - 28239534
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| ||||| ||||| |||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
28239396 |
gaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgta |
28239495 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
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|
| T |
28239496 |
acaagctcccttccatggctctctgtttttctactaaat |
28239534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 28191437 - 28191557
Alignment:
| Q |
19 |
ttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatgg |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||| |||||||| ||||||||| | | |
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|
| T |
28191437 |
ttttatttgccaggatttgcaaggattccagagtggtttgatcaccgaaacatgggacataaattttctttttggtttcgtaacaagctcccttcctttg |
28191536 |
T |
|
| Q |
119 |
ctctctgtttttctactaaat |
139 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
28191537 |
ctatctgtttttctactaaat |
28191557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28328610 - 28328748
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| |||||| || || |||||||| | |||||||||| ||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
28328610 |
gaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgta |
28328709 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| | |||||||||||||||||| |||||||||||| |
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|
| T |
28328710 |
acaagcatccttccatggctctctgtatttctactaaat |
28328748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28506246 - 28506384
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| |||||| || || |||||||| | |||||||||| ||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
28506246 |
gaggctggagatacaaaattttgtttttcaggatttgcaaaaattccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgta |
28506345 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
28506346 |
acaagcatccttccatggctctctgtatttctactaaat |
28506384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 27217601 - 27217635
Alignment:
| Q |
80 |
caatttctttttggttccgtaacaacctcccttcc |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
27217601 |
caatttctttttcgttccgtaacaacctcccttcc |
27217635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
| Q |
252 |
tcatcatacatatttgtatgatatggagctggaat |
286 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28328864 |
tcatcatacatatttgtatgatatgaagctggaat |
28328898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
| Q |
252 |
tcatcatacatatttgtatgatatggagctggaat |
286 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28506500 |
tcatcatacatatttgtatgatatgaagctggaat |
28506534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 2170704 - 2170620
Alignment:
| Q |
40 |
aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct |
124 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||| ||||| ||| ||| |||||||||| ||||||| |
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|
| T |
2170704 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
2170620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 28142682 - 28142782
Alignment:
| Q |
39 |
aaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctctgtttttctactaaa |
138 |
Q |
| |
|
||||||||||||||||||||| | ||||| || ||||| ||||| |||| ||||| ||| | || |||||||||||||| ||| ||| |||||||| |
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|
| T |
28142682 |
aaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa |
28142781 |
T |
|
| Q |
139 |
t |
139 |
Q |
| |
|
| |
|
|
| T |
28142782 |
t |
28142782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 28152278 - 28152362
Alignment:
| Q |
40 |
aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct |
124 |
Q |
| |
|
||||||||||||| |||| | | ||| | || | |||| ||||||||||| ||||| | |||||| ||||||||||| ||||||| |
|
|
| T |
28152278 |
aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctct |
28152362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46536 - 46674
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| ||||| |||||| |||||||| | |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
46536 |
gaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgta |
46635 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46636 |
acaagctcccttccatggctctctgtttttctactaaat |
46674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 39558 - 39696
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| ||||| ||||| |||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39558 |
gaggctggaggaaccatattttgtttttcaggatttgtgaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgta |
39657 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39658 |
acaagctcccttccatggctctctgtttttctactaaat |
39696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 55394 - 55256
Alignment:
| Q |
1 |
gagggtggagaaaccaagttttgtttgcctggatttgcaaggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgta |
100 |
Q |
| |
|
|||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
55394 |
gaggctggacaaaccatgttttgtttgccgggatttgcaaggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgta |
55295 |
T |
|
| Q |
101 |
acaacctcccttccatggctctctgtttttctactaaat |
139 |
Q |
| |
|
|||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
55294 |
acaagctcccttccacggctctctttttttctactaaat |
55256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 12557 - 12641
Alignment:
| Q |
40 |
aggattccagagtggtttgatcgccaaaacatgggacatacaatttctttttggttccgtaacaacctcccttccatggctctct |
124 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||| ||||| ||| ||| |||||||||| ||||||| |
|
|
| T |
12557 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
12641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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