View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_73 (Length: 284)
Name: NF0818_low_73
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 35856859 - 35857106
Alignment:
| Q |
29 |
aaataatacatgtagaggtggaaatgacgattgaataaatacatgtagaggtggaaatttgattcatcaatattcatctattgattaatccatccaattc |
128 |
Q |
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| T |
35856859 |
aaataatacatgcagaggtggaaatgacgattgaataaatacatgtagaggtggaaatttgattcatcaatattcatctattgattaatccatccaattc |
35856958 |
T |
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| Q |
129 |
gtccatcaaacaaaaacttgttaatgaattggttttggatccatcaatttaaaactatcttcttttatgctttagtgcaacttaagttgtgttttgtgtg |
228 |
Q |
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| T |
35856959 |
gtccatcaaacaaaaacttgttaatgaattggctttggatccatcaatttaaaactatcttcttttgtgctttagtgcaacttaagttgtgttttgtgtg |
35857058 |
T |
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| Q |
229 |
tatttgtctttgtgtggtacgtttgctcgtcatcttatgagtattatc |
276 |
Q |
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| T |
35857059 |
tatttgtctttgtgcggtacgtttgctcgtcatcttatgagtattatc |
35857106 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 5496220 - 5496148
Alignment:
| Q |
115 |
aatccatccaattcgtccatcaaaca--aaaacttgttaatgaattggttttggatccatcaatttaaaactat |
186 |
Q |
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| T |
5496220 |
aatccatccaattcatccatcaaacaaaaaaaattgttaatggattggattt-gatccatccattaaaaactat |
5496148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 11674831 - 11674759
Alignment:
| Q |
115 |
aatccatccaattcgtccatcaaaca--aaaacttgttaatgaattggttttggatccatcaatttaaaactat |
186 |
Q |
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| T |
11674831 |
aatccatccaattcatccatcaaacaaaaaaatttgttaatggattggattt-gatccatccattaaaaactat |
11674759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 11683110 - 11683038
Alignment:
| Q |
115 |
aatccatccaattcgtccatcaaaca--aaaacttgttaatgaattggttttggatccatcaatttaaaactat |
186 |
Q |
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| T |
11683110 |
aatccatccaattcatccatcaaacaaaaaaatttgttaatggattggattt-gatccatccattaaaaactat |
11683038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 34279237 - 34279173
Alignment:
| Q |
121 |
tccaattcgtccatcaaacaaaaacttgttaatgaattggttttggatccatcaatttaaaactat |
186 |
Q |
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| T |
34279237 |
tccaattcgtccaccaaagaaaaatttgttaattgattgattt-ggattcatcaatttaaaactat |
34279173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 36874849 - 36874920
Alignment:
| Q |
115 |
aatccatccaattcgtccatcaaacaaaaac--ttgttaatgaattggttttggatccatcaatttaaaacta |
185 |
Q |
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| T |
36874849 |
aatccacccaatccatccatcaaacaaaaaaaattgttaatgaattgg-tttgaatccatccatttaaaacta |
36874920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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