View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_8 (Length: 591)
Name: NF0818_low_8
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 222 - 554
Target Start/End: Complemental strand, 43052417 - 43052076
Alignment:
| Q |
222 |
cctaataataaatctccatggaacaagaaaatgcattttgttagcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaa |
321 |
Q |
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| T |
43052417 |
cctaataataaatctccatggaacaagaaaatgcattttgtttgcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaa |
43052318 |
T |
|
| Q |
322 |
tagacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagat----- |
416 |
Q |
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| T |
43052317 |
tagacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagataaaaa |
43052218 |
T |
|
| Q |
417 |
--nnnnnnnnncaaagaatagtttccaattaagaaacagatgatgaaatcatc--agagtcccgtgtctacaggccctgatcaatgaggtaatctcccaa |
512 |
Q |
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| T |
43052217 |
aaaaaaaaaaacaaagaatagtttccaattaagaaacagatgatgaaatcatcatagagtcccgtgtctacaggccctgatcaatgaggtaatctcccaa |
43052118 |
T |
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| Q |
513 |
cctctcaacaaccatgttgcattgtccaggagtcacaggttc |
554 |
Q |
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| T |
43052117 |
cctctcaacaaccatgttgcattgtccaggagtcacaggttc |
43052076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 43052531 - 43052453
Alignment:
| Q |
97 |
agaggaatttctaaacgtggttggaggagggctactgaatactgatcattatgattaaattcccaacaactgcattaga |
175 |
Q |
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| T |
43052531 |
agaggaatttctaaacgtggttggaggagggctactgaatactgatcattatgattaaattcctaacatctgcattaga |
43052453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 34172368 - 34172425
Alignment:
| Q |
498 |
gaggtaatctcccaacctctcaacaaccatgttgcattgtccaggagtcacaggttct |
555 |
Q |
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| T |
34172368 |
gaggtaatctcccaacctctcaacaaccatgttgcactgtccaggagtaacaggttct |
34172425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 545
Target Start/End: Original strand, 34107504 - 34107538
Alignment:
| Q |
511 |
aacctctcaacaaccatgttgcattgtccaggagt |
545 |
Q |
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| T |
34107504 |
aacctcttaacaaccatgttgcattgtccaggagt |
34107538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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