View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0818_low_80 (Length: 268)

Name: NF0818_low_80
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0818_low_80
NF0818_low_80
[»] chr8 (5 HSPs)
chr8 (1-258)||(10680201-10680467)
chr8 (202-254)||(10681926-10681978)
chr8 (63-97)||(10680189-10680223)
chr8 (210-258)||(17963460-17963508)
chr8 (200-245)||(4390754-4390799)
[»] chr1 (9 HSPs)
chr1 (184-258)||(46683595-46683670)
chr1 (199-258)||(2228097-2228156)
chr1 (199-258)||(46683379-46683438)
chr1 (199-258)||(47477311-47477370)
chr1 (211-247)||(680662-680698)
chr1 (199-255)||(5153319-5153375)
chr1 (199-258)||(47478620-47478679)
chr1 (211-249)||(49617161-49617199)
chr1 (199-249)||(51745846-51745896)
[»] chr5 (6 HSPs)
chr5 (199-257)||(34002964-34003022)
chr5 (199-249)||(13828928-13828978)
chr5 (210-257)||(37987514-37987561)
chr5 (211-246)||(13614818-13614853)
chr5 (211-249)||(13827617-13827655)
chr5 (199-249)||(19685674-19685724)
[»] chr4 (13 HSPs)
chr4 (199-258)||(4349932-4349991)
chr4 (199-255)||(3334690-3334746)
chr4 (199-258)||(55515551-55515611)
chr4 (211-258)||(3087944-3087991)
chr4 (199-257)||(3086437-3086495)
chr4 (199-249)||(10224431-10224481)
chr4 (199-249)||(23356630-23356680)
chr4 (199-248)||(55514755-55514804)
chr4 (213-249)||(33953071-33953107)
chr4 (199-249)||(19137819-19137869)
chr4 (199-249)||(23357942-23357992)
chr4 (213-258)||(25728727-25728772)
chr4 (200-248)||(10231220-10231268)
[»] chr2 (6 HSPs)
chr2 (199-258)||(14146956-14147015)
chr2 (199-256)||(14145593-14145650)
chr2 (211-247)||(34880445-34880481)
chr2 (199-245)||(36626423-36626469)
chr2 (199-244)||(33373168-33373213)
chr2 (199-244)||(34506375-34506420)
[»] chr7 (4 HSPs)
chr7 (202-255)||(43962768-43962821)
chr7 (213-258)||(18655135-18655180)
chr7 (199-246)||(46484321-46484368)
chr7 (213-249)||(46419362-46419398)
[»] scaffold0586 (2 HSPs)
scaffold0586 (200-249)||(7638-7687)
scaffold0586 (200-249)||(8684-8733)
[»] scaffold1234 (1 HSPs)
scaffold1234 (199-249)||(1801-1851)
[»] chr3 (7 HSPs)
chr3 (199-248)||(24742776-24742825)
chr3 (210-249)||(23211332-23211371)
chr3 (199-244)||(13102402-13102447)
chr3 (213-258)||(33854406-33854451)
chr3 (211-247)||(39195609-39195645)
chr3 (211-247)||(39197830-39197866)
chr3 (211-247)||(51970057-51970093)
[»] scaffold0012 (1 HSPs)
scaffold0012 (211-247)||(191199-191235)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 10680201 - 10680467
Alignment:
Q  1 ctatggtgcggtacaaaagaagggtggttgtccagtccattgcttcttcaaaatgttgactgctttgtcccccgctatggtgcggtacaaaagaaggaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680201 ctatggtgcggtacaaaagaagggtggttgtccagtccattgcttcttcaaaatgttgactgctttgtcccccgctatggtgcggtacaaaagaaggaca 10680300  T
Q  101 tattttcaatatttgtactgctttgtgtttcatatttaaacaaatcaaacataccaaaagaggaattaaagaannnnnnnnnctgccctagtttttgcc- 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||| |||||||||||||     
T  10680301 tatttccaatatttgtactgctttgtgtttcatatttaaacaaatcaaacacaccaaaagaggaattaaagaa-ttttttttctgtcctagtttttgcca 10680399  T
Q  200 ---------aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
             |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10680400 aaaaaacataaaaatacctcactttttcgaaaaattgcataaatgttctactttttcaggggtctctg 10680467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 10681978 - 10681926
Alignment:
Q  202 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtc 254  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  10681978 aaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtc 10681926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 10680189 - 10680223
Alignment:
Q  63 ctttgtcccccgctatggtgcggtacaaaagaagg 97  Q
    |||||||||||||||||||||||||||||||||||    
T  10680189 ctttgtcccccgctatggtgcggtacaaaagaagg 10680223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 17963508 - 17963460
Alignment:
Q  210 cactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||    
T  17963508 cactttttcgaaaaattgcacaaatgccctactttttcagatgtctctg 17963460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 4390754 - 4390799
Alignment:
Q  200 aaaaatacctcactttttcgaaaaattgcataaatgctctactttt 245  Q
    |||||| |||||||||| | ||||||||||||||||| ||||||||    
T  4390754 aaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 4390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 46683670 - 46683595
Alignment:
Q  184 tgccctagtttttgccaaaaa-tacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683670 tgccctagtttttgtcaaaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 2228156 - 2228097
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  2228156 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttaaggggtctctg 2228097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 46683379 - 46683438
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  46683379 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcaggggtctctg 46683438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 47477311 - 47477370
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  47477311 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttcaggggtctctg 47477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 680662 - 680698
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    |||||||||||||||||||||||||| ||||||||||    
T  680662 actttttcgaaaaattgcataaatgccctactttttc 680698  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 5153375 - 5153319
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 255  Q
    ||||||||||| ||||||| ||||||||||||||||   ||||||||||||| ||||    
T  5153375 caaaaataccttacttttttgaaaaattgcataaatatcctactttttcaggtgtct 5153319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 47478679 - 47478620
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||| | | |||||||||||||||||| |||||  ||||||||| |||||||||||    
T  47478679 caaaaatatcccgctttttcgaaaaattgcagaaatgtcctacttttttaggggtctctg 47478620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 49617161 - 49617199
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  49617161 actttttcgaaaaattgcacaaatgccctactttttcag 49617199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 51745846 - 51745896
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  51745846 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 51745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 34002964 - 34003022
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 257  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  34002964 caaaaatacctcactttttcgaaaaattgcagaaatgccctactttttcaggggtctct 34003022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 13828978 - 13828928
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  13828978 caaaaatgccccactttttcgaaaaattgcaaaaatgctctactttttcag 13828928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 37987514 - 37987561
Alignment:
Q  210 cactttttcgaaaaattgcataaatgctctactttttcaggggtctct 257  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  37987514 cactttttcgaaaaattgcagaaatgccctactttttcaggagtctct 37987561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 13614818 - 13614853
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctacttttt 246  Q
    |||||||||||||||||||||||||| |||||||||    
T  13614818 actttttcgaaaaattgcataaatgccctacttttt 13614853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 13827617 - 13827655
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  13827617 actttttcgaaaaattgcaaaaatgccctactttttcag 13827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 19685724 - 19685674
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || ||||||| | ||||||||||||||||| ||||||||||||    
T  19685724 caaaaatgccccacttttgcaaaaaattgcataaatgccctactttttcag 19685674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 4349932 - 4349991
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  4349932 caaaaatatctcactttttcgaaaaattgcagaaatgtcctactttttcaggggtctctg 4349991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 3334746 - 3334690
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 255  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||    
T  3334746 caaaaataccccactttttcgaaaaattgcagaaatgccctactttttcatgggtct 3334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 55515611 - 55515551
Alignment:
Q  199 caaaaatacctcactttttc-gaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||| ||||||||  ||||||||||| |||||| |||||||||||||||||||||    
T  55515611 caaaaataccccactttttttgaaaaattgcaaaaatgccctactttttcaggggtctctg 55515551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 3087991 - 3087944
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  3087991 actttttcgaaaaattgcagaaatgccatactttttcaggggtctctg 3087944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 3086437 - 3086495
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctct 257  Q
    ||||||||||  | ||||||||||||||||| |||||| ||| ||||||||||||||||    
T  3086437 caaaaataccctattttttcgaaaaattgcagaaatgccctattttttcaggggtctct 3086495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 10224431 - 10224481
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  10224431 caaaaatgccccactttttcgaaaaattgcgtaaatgccctactttttcag 10224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 23356630 - 23356680
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  23356630 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 23356680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 55514755 - 55514804
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 248  Q
    |||||||||| |||||||||||||||||||  |||||| |||||||||||    
T  55514755 caaaaataccccactttttcgaaaaattgctgaaatgccctactttttca 55514804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 33953107 - 33953071
Alignment:
Q  213 tttttcgaaaaattgcataaatgctctactttttcag 249  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33953107 tttttcgaaaaattgcataaatgccctactttttcag 33953071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 19137869 - 19137819
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || |||||||||||||||||||  |||||| ||||||||||||    
T  19137869 caaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttcag 19137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 23357992 - 23357942
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || || ||||||||||||||||| |||||| ||||||||||||    
T  23357992 caaaaatgccccattttttcgaaaaattgcaaaaatgccctactttttcag 23357942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 25728727 - 25728772
Alignment:
Q  213 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    ||||||||||||||||| ||||   |||||||||||||||||||||    
T  25728727 tttttcgaaaaattgcagaaatatcctactttttcaggggtctctg 25728772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 10231268 - 10231220
Alignment:
Q  200 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 248  Q
    |||||| || |||||||||||||||||||  |||||| |||||||||||    
T  10231268 aaaaatgccccactttttcgaaaaattgcgcaaatgccctactttttca 10231220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 14147015 - 14146956
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  14147015 caaaaataccccactttttcgaaaaatggcagaaatgccctactttttcaggggtctctg 14146956  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 14145593 - 14145650
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtctc 256  Q
    |||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||    
T  14145593 caaaaataccccactttttcgaaaaattgcagaaatggcctactttttcaggggtctc 14145650  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 34880481 - 34880445
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34880481 actttttcgaaaaattgcataaatgccctactttttc 34880445  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 36626423 - 36626469
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttt 245  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||    
T  36626423 caaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt 36626469  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 33373213 - 33373168
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 244  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||    
T  33373213 caaaaatgccccactttttcgaaaaattgcgtaaatgccctacttt 33373168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 34506375 - 34506420
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 244  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||||    
T  34506375 caaaaataccttactttttcgaaaaattgcccaaatgccctacttt 34506420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 43962768 - 43962821
Alignment:
Q  202 aaatacctcactttttcgaaaaattgcataaatgctctactttttcaggggtct 255  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  43962768 aaataccccactttttcgaaaaattgcagaaatgctttactttttcaggggtct 43962821  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 18655135 - 18655180
Alignment:
Q  213 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  18655135 tttttcgaaaaattgcataaatgctctactttttcagaagtctctg 18655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 46484321 - 46484368
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctacttttt 246  Q
    ||||||||||||| |||| | ||||||||||||||||| |||||||||    
T  46484321 caaaaatacctcatttttgcaaaaaattgcataaatgccctacttttt 46484368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 46419362 - 46419398
Alignment:
Q  213 tttttcgaaaaattgcataaatgctctactttttcag 249  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  46419362 tttttcaaaaaattgcataaatgccctactttttcag 46419398  T

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Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 7638 - 7687
Alignment:
Q  200 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  7638 aaaaatgcttcactttttcgaaaaattgcataaatgccctactttttcag 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 8733 - 8684
Alignment:
Q  200 aaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||||||    
T  8733 aaaaatgcctcactttttcgaaaaattgcacaaatgccctactttttcag 8684  T

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Target: scaffold1234 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 1801 - 1851
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    ||||||| || |||||||||||||||||||| |||||| ||||||||||||    
T  1801 caaaaatgccccactttttcgaaaaattgcaaaaatgccctactttttcag 1851  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 24742776 - 24742825
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctactttttca 248  Q
    |||||||||| ||||||||||||||||| || |||||| |||||||||||    
T  24742776 caaaaataccccactttttcgaaaaattacacaaatgccctactttttca 24742825  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 23211332 - 23211371
Alignment:
Q  210 cactttttcgaaaaattgcataaatgctctactttttcag 249  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  23211332 cactttttcgaaaaattgcaaaaatgccctactttttcag 23211371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 13102402 - 13102447
Alignment:
Q  199 caaaaatacctcactttttcgaaaaattgcataaatgctctacttt 244  Q
    ||||||| |||||||||||| |||||||||| |||||| |||||||    
T  13102402 caaaaatgcctcactttttcaaaaaattgcacaaatgccctacttt 13102447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 33854406 - 33854451
Alignment:
Q  213 tttttcgaaaaattgcataaatgctctactttttcaggggtctctg 258  Q
    |||||||||||||||||||||| | ||||||||||||  |||||||    
T  33854406 tttttcgaaaaattgcataaataccctactttttcagaagtctctg 33854451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 39195609 - 39195645
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39195609 actttttcgaaaaattgcataaataccctactttttc 39195645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 39197866 - 39197830
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    |||||||||||||||||||||||| | ||||||||||    
T  39197866 actttttcgaaaaattgcataaataccctactttttc 39197830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 51970093 - 51970057
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    |||||||||||||||||||||||| | ||||||||||    
T  51970093 actttttcgaaaaattgcataaataccctactttttc 51970057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 191199 - 191235
Alignment:
Q  211 actttttcgaaaaattgcataaatgctctactttttc 247  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  191199 acttttttgaaaaattgcataaatgccctactttttc 191235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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