View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_86 (Length: 253)
Name: NF0818_low_86
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_86 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6496818 - 6497041
Alignment:
| Q |
1 |
acatctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496818 |
acatctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatg |
6496917 |
T |
|
| Q |
101 |
aatctagaccgccaacatcttttacaagtgatgaaatgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496918 |
aatctagactgccaacatcttttacaagtgatgaaacgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatc |
6497017 |
T |
|
| Q |
201 |
agtttccaaaagccatgaatcacc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
6497018 |
agtttccaaaagccatgaatcacc |
6497041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6461854 - 6461631
Alignment:
| Q |
1 |
acatctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatg |
100 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||| |
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| T |
6461854 |
acatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggttatttttgatg |
6461755 |
T |
|
| Q |
101 |
aatctagaccgccaacatcttttacaagtgatgaaatgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatc |
200 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
6461754 |
aatctagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatc |
6461655 |
T |
|
| Q |
201 |
agtttccaaaagccatgaatcacc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
6461654 |
agtttccaaaagccatgaatcacc |
6461631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 6473061 - 6472853
Alignment:
| Q |
16 |
acctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaaga--atccttcgttgttattttcaatgaatctagaccgcc |
113 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| | |||||||| |||||| ||||||| || || |||||||| |||| | ||||| | |
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| T |
6473061 |
acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgct--gttgttatcggtgatgactttagactctc |
6472964 |
T |
|
| Q |
114 |
aacatcttttacaagtgatgaaatgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtttccaaaagc |
213 |
Q |
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|||||||||| ||| | ||||| ||||| ||| | ||||||| || ||||| ||| ||||| |||| |||| | |||||||||| |||| ||||||| |
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| T |
6472963 |
aacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagc |
6472864 |
T |
|
| Q |
214 |
catgaatcacc |
224 |
Q |
| |
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||||||||||| |
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| T |
6472863 |
catgaatcacc |
6472853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 6520449 - 6520377
Alignment:
| Q |
152 |
attctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtttccaaaagccatgaatcacc |
224 |
Q |
| |
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|||||||||| |||||||| | ||| |||| || ||| ||||||||||||||| ||||| |||||||||||| |
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| T |
6520449 |
attctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaaaccatgaatcacc |
6520377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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