View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0818_low_93 (Length: 251)
Name: NF0818_low_93
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_93 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 18524688 - 18524925
Alignment:
| Q |
13 |
aatatcatcaactttcaatacaaatannnnnnnnaaaaagcaaacgaagttgcagcaagatgcaacccctggatatattaataacagatgaaagaacaaa |
112 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18524688 |
aatatcatcaattttcaatacaaatattttttaaaaaaagcaaaggaagttgcaggaagatgcaacccctggatatattaataacagatgaaagaacaaa |
18524787 |
T |
|
| Q |
113 |
acgggggaatgaggggggacataaacctaaccctcaaaagagttaacaaagtctaaaa-ttaggaataccaagtccattcctatcaaaatggtcatatat |
211 |
Q |
| |
|
| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18524788 |
aaaggg-aataaagggggacataaacctaaccctcaaaagagttaacaaagtctaaaaattaggaataccaagtccattcctatcaaaatggtcatatat |
18524886 |
T |
|
| Q |
212 |
ttctacaggcagattttgaaacctaagtgtaagaaggtat |
251 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18524887 |
ttgtacaggcagattttgaaacc-aagtgtaagaaggtat |
18524925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 6162237 - 6162314
Alignment:
| Q |
126 |
gggggacataaa-cctaaccctcaaaagagttaacaaagtctaaaattaggaataccaagtccattcctatcaaaatg |
202 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||| ||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
6162237 |
gggggacataaaacctaaccctcaggagagttaatgaagcctaaaattaggaatatcaagactattcctatcaaaatg |
6162314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 62 times since January 2019
Visitors: 5846