View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0818_low_95 (Length: 250)
Name: NF0818_low_95
Description: NF0818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0818_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8754001 - 8754239
Alignment:
| Q |
1 |
tccttctttgacttgcattctctctgacactctaaacaattctcctattggatttgcacaattatttctctatagtttctgagtactttgaaatttttaa |
100 |
Q |
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| T |
8754001 |
tccttcttttacttgcattctctctgacactctaaacaattctcctattggatttgcacaattatttctctattgtttctgagtactttgaaatttttaa |
8754100 |
T |
|
| Q |
101 |
gggtgatcttaagtacttattctaattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagttcaacaaatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8754101 |
gggtgatcttaagtacttattctaattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagtttaacaaatttt |
8754200 |
T |
|
| Q |
201 |
aagtgaagacacatgaaatattccacaagtcacattcat |
239 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
8754201 |
aagtgaagacacatcaaatattccacaagtcacattcat |
8754239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 8744738 - 8744955
Alignment:
| Q |
1 |
tccttctttgacttgcattctctctgacactctaaacaattctcctattggatttgcacaattatttctctatagtttctgagtactttgaaatttttaa |
100 |
Q |
| |
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||||||| | |||| ||||||| || |||||| ||||||| ||||||| |||||| ||||||||||||| || ||| |||||| ||||||||| |||| |
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| T |
8744738 |
tccttctcttacttacattctcactagcactcttaacaattttcctattagatttgtacaattatttctcaattctttatgagtattttgaaattgttaa |
8744837 |
T |
|
| Q |
101 |
gggtgatcttaa----------gtacttattctaattagctccattcatcgaggtgttgatttttccttggcttcaaaacccagccataaacgcaagttc |
190 |
Q |
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|||||||||| | || |||||| |||||||| |||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
8744838 |
gggtgatcttgaaatgggtttagttcttattgtaattagcatcattcatcatggtgttgattttttcttggtttcaaaacctagccataaacgcaagttt |
8744937 |
T |
|
| Q |
191 |
aacaaatttgaagtgaag |
208 |
Q |
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| T |
8744938 |
gacaaatttgaagtgaag |
8744955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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