View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_high_15 (Length: 220)
Name: NF0819_high_15
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 46359136 - 46358956
Alignment:
| Q |
41 |
catcaatccaaaggagtgtaggagttgattgagaatcctagtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
140 |
Q |
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| T |
46359136 |
catcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
46359037 |
T |
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| Q |
141 |
atgccgttcttccttagatgaatattatcatcagtggaacca-cggcatatttctgaaacaagggattccagaacaggggt |
220 |
Q |
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| T |
46359036 |
atgtcgttcttccttagatgaatattatcatcagtggaaccagcggcatatttctgaaacaagggattccagaacaggggt |
46358956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 44460266 - 44460087
Alignment:
| Q |
41 |
catcaatccaaaggagtgtaggagttgattgagaatcctagtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
140 |
Q |
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| T |
44460266 |
catcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
44460167 |
T |
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| Q |
141 |
atgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctgaaacaagggattccagaacaggggt |
220 |
Q |
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| T |
44460166 |
atgtcgttcttccttagatgaatattatcatcggtggaaccacgacatatttctgaaacaagggattccagaacaggggt |
44460087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 44467799 - 44467620
Alignment:
| Q |
41 |
catcaatccaaaggagtgtaggagttgattgagaatcctagtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
140 |
Q |
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| T |
44467799 |
catcaatccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaat |
44467700 |
T |
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| Q |
141 |
atgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctgaaacaagggattccagaacaggggt |
220 |
Q |
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| T |
44467699 |
atgtcgttcttccttagatgaatattatcatcggtggaaccacgacatatttctgaaacaagggattccagaacaggggt |
44467620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 34502468 - 34502562
Alignment:
| Q |
126 |
tcccacagaaaaaatatgccgttcttccttagatgaatattatcatcagtggaaccacggcatatttctgaaacaagggattccagaacaggggt |
220 |
Q |
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| T |
34502468 |
tcccacagaaaatacatgtcattcttccttagataaatattatcttcaacggaaccaccacatattgctgaaacaagggattccagaacaagggt |
34502562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 44459490 - 44459445
Alignment:
| Q |
106 |
ggccaatatgcttaagcaattcccacagaaaaaatatgccgttctt |
151 |
Q |
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| T |
44459490 |
ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttctt |
44459445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 44467023 - 44466978
Alignment:
| Q |
106 |
ggccaatatgcttaagcaattcccacagaaaaaatatgccgttctt |
151 |
Q |
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| T |
44467023 |
ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttctt |
44466978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 40180712 - 40180784
Alignment:
| Q |
62 |
gagttgattgagaatcctagtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacaga |
134 |
Q |
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||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
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| T |
40180712 |
gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacaga |
40180784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 38605153 - 38605264
Alignment:
| Q |
46 |
atccaaaggagtgtaggagttgattgagaatcctagtgctaagaagatcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgcc |
145 |
Q |
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| T |
38605153 |
atccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcggaatggccaatatgtttaagcaagtcccacagaaaaagtatgtc |
38605252 |
T |
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| Q |
146 |
gttcttccttag |
157 |
Q |
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|||| |||||| |
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| T |
38605253 |
attctgccttag |
38605264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 38605897 - 38605955
Alignment:
| Q |
99 |
tgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttag |
157 |
Q |
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||||| |||||||||| ||||||||| ||||||||||||| |||| | ||||||||||| |
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| T |
38605897 |
tgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattcttccttag |
38605955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 410838 - 410775
Alignment:
| Q |
94 |
cagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgccgttcttccttag |
157 |
Q |
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| T |
410838 |
cagtctgatggtggccaatatgcttaagcaagtctcacataaaaattatgtcattcttccttag |
410775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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