View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_high_6 (Length: 389)
Name: NF0819_high_6
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 55336535 - 55336895
Alignment:
| Q |
1 |
tgccaacactttctccaatgaagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaac |
100 |
Q |
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| T |
55336535 |
tgccaacactttctccaatgaagattccacatcttcctcagtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaat |
55336634 |
T |
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| Q |
101 |
cttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgata |
200 |
Q |
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| T |
55336635 |
cttgtagcattgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaagagtggatgata |
55336734 |
T |
|
| Q |
201 |
gtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaag |
300 |
Q |
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| T |
55336735 |
gtttcagagccaacagttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaag |
55336834 |
T |
|
| Q |
301 |
taggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagat |
361 |
Q |
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| T |
55336835 |
taggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagat |
55336895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 116 - 357
Target Start/End: Original strand, 55331212 - 55331453
Alignment:
| Q |
116 |
tgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgatagtttcagagccaaca |
215 |
Q |
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| T |
55331212 |
tgttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaagtgtggatgatagtttaagagccaaaa |
55331311 |
T |
|
| Q |
216 |
gttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaatt |
315 |
Q |
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|| | | ||| ||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
55331312 |
gtggggtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgttccaatt |
55331411 |
T |
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| Q |
316 |
ttgacgctgttcgcagatgtttttgtgcatttcaattctgtc |
357 |
Q |
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| T |
55331412 |
ctgtcgctgttggctgaggttgttgtgcatttcgattctgtc |
55331453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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