View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0819_low_10 (Length: 411)

Name: NF0819_low_10
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0819_low_10
NF0819_low_10
[»] chr6 (34 HSPs)
chr6 (8-377)||(29826936-29827305)
chr6 (12-377)||(29842855-29843210)
chr6 (67-367)||(28326487-28326787)
chr6 (67-367)||(28504123-28504423)
chr6 (270-367)||(28186606-28186703)
chr6 (260-376)||(26624473-26624589)
chr6 (260-376)||(26730450-26730566)
chr6 (67-166)||(28235574-28235673)
chr6 (126-376)||(28140603-28140853)
chr6 (204-276)||(29823218-29823291)
chr6 (11-363)||(28097320-28097672)
chr6 (260-363)||(27705131-27705234)
chr6 (23-166)||(28227917-28228060)
chr6 (288-367)||(28296613-28296692)
chr6 (288-367)||(28515381-28515460)
chr6 (250-377)||(26636838-26636965)
chr6 (250-377)||(26742804-26742931)
chr6 (67-166)||(28182127-28182226)
chr6 (290-376)||(27697450-27697536)
chr6 (253-363)||(28787433-28787543)
chr6 (266-363)||(27680158-27680255)
chr6 (279-376)||(28244016-28244113)
chr6 (118-166)||(28243855-28243903)
chr6 (268-304)||(29823969-29824005)
chr6 (290-377)||(26849944-26850031)
chr6 (250-377)||(26960317-26960444)
chr6 (269-376)||(27609984-27610091)
chr6 (126-188)||(26938097-26938159)
chr6 (253-363)||(28793554-28793664)
chr6 (109-166)||(25074918-25074975)
chr6 (250-319)||(25075059-25075128)
chr6 (109-166)||(26950794-26950851)
chr6 (109-166)||(26976002-26976059)
chr6 (287-360)||(27426492-27426565)
[»] chr4 (2 HSPs)
chr4 (109-376)||(5089814-5090081)
chr4 (287-360)||(18074990-18075063)
[»] chr5 (1 HSPs)
chr5 (67-368)||(16691876-16692177)
[»] scaffold0038 (4 HSPs)
scaffold0038 (67-166)||(35736-35835)
scaffold0038 (23-166)||(28415-28558)
scaffold0038 (279-376)||(44178-44275)
scaffold0038 (118-166)||(44017-44065)
[»] scaffold0019 (1 HSPs)
scaffold0019 (67-367)||(57167-57467)
[»] chr2 (2 HSPs)
chr2 (8-188)||(17992267-17992447)
chr2 (119-363)||(3280720-3280964)
[»] chr1 (2 HSPs)
chr1 (278-363)||(267217-267302)
chr1 (122-183)||(26136952-26137013)
[»] scaffold0277 (3 HSPs)
scaffold0277 (122-165)||(3787-3830)
scaffold0277 (253-363)||(3589-3699)
scaffold0277 (253-363)||(12552-12662)
[»] scaffold0419 (1 HSPs)
scaffold0419 (253-363)||(8682-8792)
[»] scaffold1870 (1 HSPs)
scaffold1870 (290-363)||(1-74)
[»] scaffold0003 (1 HSPs)
scaffold0003 (287-360)||(60798-60871)
[»] chr8 (2 HSPs)
chr8 (107-196)||(16441105-16441194)
chr8 (290-363)||(29272715-29272788)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 29826936 - 29827305
Alignment:
Q  8 aagcaaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||| |    
T  29826936 aagcaaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggacttgattggtttggtc 29827035  T
Q  108 ctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827036 ctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatc 29827135  T
Q  208 ccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827136 ccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccg 29827235  T
Q  308 ttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagata 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827236 ttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagata 29827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 29843210 - 29842855
Alignment:
Q  12 aaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggcctgg 111  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||  |||| | | |||| |||||    
T  29843210 aaaggctaggacgaaagaaagttcttttgattcttgacgatgttgacaacctaaggcaattgcaagttatggcgggcggacttgactggtttggtcctgg 29843111  T
Q  112 cagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatccctt 211  Q
     |||| ||||||||||||   ||||||||||||||||||||||||||||  |||| ||| ||||||||||||| ||||||||||||||| ||||||||||    
T  29843110 tagcagagtgatcattac---tcgagaccaacatttgctaacaagtcattcgatttatataaaatatcaagtaaatgcgctaaataggaaagaatccctt 29843014  T
Q  212 gaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttgg 311  Q
    ||||       |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29843013 gaat-------gtggaaagcttttaaaaatagtatagttgattcaagctatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttgg 29842921  T
Q  312 ttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagata 377  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  29842920 ttttagaattagtaggtccagctttgtttggaaagaatatagaagaatggaaatctacattagata 29842855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 367
Target Start/End: Original strand, 28326487 - 28326787
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||||| ||| |||| |||||  |||||| | | || |||||||| | ||||||| |||||||||||||| |||||||||||| |||||| ||||||    
T  28326487 gcaattgcaggttttggctggaggacttgattggttcggtcctggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggatt 28326586  T
Q  167 catagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatg 266  Q
     | |||  |||| || |   |  | ||| || || |||| | |||||||| || ||||||||  |||| ||| |||  | ||  |||||||  | ||| |    
T  28326587 gaaagagcatatgaaattcctaagttaattaagagagaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacg 28326686  T
Q  267 acattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatc 366  Q
     ||||||| || ||||| || ||||||||||||||||||| |||| ||||||| |||| ||| ||   ||||||||||||||||||| |||||| |||||    
T  28326687 gcattttatactgtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatc 28326786  T
Q  367 t 367  Q
    |    
T  28326787 t 28326787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 367
Target Start/End: Original strand, 28504123 - 28504423
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||||| ||| |||| |||||  |||||| | | || |||||||| | ||||||| |||||||||||||| |||||||||||| |||||| ||||||    
T  28504123 gcaattgcaggttttggctggaggacttgattggttcggtcctggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggatt 28504222  T
Q  167 catagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatg 266  Q
     | |||  |||| || |   |  | ||| || || |||| | |||||||| || ||||||||  |||| ||| |||  | ||  |||||||  | ||| |    
T  28504223 gaaagagcatatgaaattcctaagttaattaagagagaagctcttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacg 28504322  T
Q  267 acattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatc 366  Q
     ||||||| || ||||| || ||||||||||||||||||| |||| ||||||| |||| ||| ||   ||||||||||||||||||| |||||| |||||    
T  28504323 gcattttatactgtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatc 28504422  T
Q  367 t 367  Q
    |    
T  28504423 t 28504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 28186606 - 28186703
Alignment:
Q  270 ttttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatct 367  Q
    ||||| ||| |||| || ||||||||||||||||||| |||| ||||||| |||| ||| ||   ||||||||||||||||||| |||||||||||||    
T  28186606 ttttacaccatgcagtaacttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaaatct 28186703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 26624473 - 26624589
Alignment:
Q  260 tatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaat 359  Q
    ||||| ||||||||| |||||||| | || |||||||||||||||||||| ||||||||| | || ||| ||   |||||||||||||  ||||||||||    
T  26624473 tatgaagacattttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaat 26624572  T
Q  360 ggaaatctatattagat 376  Q
    |||| | || |||||||    
T  26624573 ggaagtatacattagat 26624589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 376
Target Start/End: Original strand, 26730450 - 26730566
Alignment:
Q  260 tatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaat 359  Q
    ||||| ||||||||| |||||||| | || |||||||||||||||||||| ||||||||| | || ||| ||   |||||||||||||  ||||||||||    
T  26730450 tatgaagacattttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaat 26730549  T
Q  360 ggaaatctatattagat 376  Q
    |||| | || |||||||    
T  26730550 ggaagtatacattagat 26730566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 28235574 - 28235673
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||||| ||| |||||||||   |||||| | |||| ||||| || | |||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  28235574 gcaattgcaggttttggcgggagaaattgattggtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggatt 28235673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 376
Target Start/End: Original strand, 28140603 - 28140853
Alignment:
Q  126 ttaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggtg 225  Q
    |||| ||||||||| ||||||||||| || ||||||||||| | ||||  ||| || |||||| | |||||| |  |||| | || || ||  | |  ||    
T  28140603 ttacaactcgagacaaacatttgctagcatgtcatgggattgagagaacttatgaactagatgggttaaataaggaagaagctctagagttgctgaaatg 28140702  T
Q  226 gaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagta 325  Q
    ||| || |||||| ||| || || ||||||||| |||||  |||||||| |||||||| |  ||||||| ||||||||||| |||| ||||||| ||||     
T  28140703 gaaggcatttaaaaataataaagttgattcaagttatgagcacattttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagtt 28140802  T
Q  326 ggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagat 376  Q
    ||| |    |||||||||||| ||| ||| || |||||||||| |||||||    
T  28140803 ggttctagcttgtttggaaagcataaagatgagtggaaatctacattagat 28140853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 29823218 - 29823291
Alignment:
Q  204 aatcccttgaattatttaggtggaaagctttt-aaagatagtataggtgattcaagatatgatgacattttaga 276  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||||||    
T  29823218 aatcccttaaattatttaggtggaaagcttttaaaaaatagtatagttgattcaagctatggtggcattttaga 29823291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 28097672 - 28097320
Alignment:
Q  11 caaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggcctg 110  Q
    |||||||||  || |||||| || || |||||||| |||||| || | ||  ||| |||  |||||| |||||| ||||||  ||||| | ||||  |||    
T  28097672 caaaggctacaacaaaagaaggttctattgattctcgacgacattaataaattgaagcagctgcaagctatggctggagggactgattggtttggtgctg 28097573  T
Q  111 gcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatccct 210  Q
    |||| | ||||||  |||||||||||||  || | |||||| |||||||||||||| |   || |||| ||  | | | | |||| | || |||| ||||    
T  28097572 gcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagccct 28097473  T
Q  211 tgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttg 310  Q
    ||||||  |||||||||| |||||||||| ||    || ||||||||| |||||    |||||| |||||||||||  ||||||| |||||||||| |||    
T  28097472 tgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattg 28097373  T
Q  311 gttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    |  || ||| || ||||| ||   |||| ||||||| ||||||||||||||||    
T  28097372 gccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 28097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 27705234 - 27705131
Alignment:
Q  260 tatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaat 359  Q
    ||||| ||||||||| |||||||| | || |||||||||||||||||||| ||||||||| || | ||| |    |||||||| ||||| ||||||||||    
T  27705234 tatgaagacattttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaagtaatgggttctaacttgtttggcaagaacatagaagaat 27705135  T
Q  360 ggaa 363  Q
    ||||    
T  27705134 ggaa 27705131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 28227917 - 28228060
Alignment:
Q  23 cgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtga 122  Q
    ||||||||||| || |||||||| || || ||| ||||  | | ||||||||  ||| |||| |||||  |||||| | |||| ||||| || | |||||    
T  28227917 cgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggacttgattggtttggtcctggaagtaaagtga 28228016  T
Q  123 tcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||||||||| || |||| |||||| ||||||||||||||    
T  28228017 tcattaccactcgaaacaaacaattgctagcaagtcatgggatt 28228060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 28296692 - 28296613
Alignment:
Q  288 cttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatct 367  Q
    ||||||||||||||||||| |||| ||||||| |||| ||| ||   ||||||||||||||||||  |||||||||||||    
T  28296692 cttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatct 28296613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 28515381 - 28515460
Alignment:
Q  288 cttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatct 367  Q
    ||||||||||||||||||| |||| ||||||| |||| ||| ||   ||||||||||||||||||  |||||||||||||    
T  28515381 cttatgcttctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaaatct 28515460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 26636838 - 26636965
Alignment:
Q  250 tgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaat 349  Q
    ||||||||| |||||| |||||||| |||||||| |    ||||||||||||||||| || | ||||||| |||| ||| ||   ||||||||||||| |    
T  26636838 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26636937  T
Q  350 atagaagaatggaaatctatattagata 377  Q
    |||| ||||||  | ||| |||||||||    
T  26636938 atagcagaatgtgagtctttattagata 26636965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 26742804 - 26742931
Alignment:
Q  250 tgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaat 349  Q
    ||||||||| |||||| |||||||| |||||||| |    ||||||||||||||||| || | ||||||| |||| ||| ||   ||||||||||||| |    
T  26742804 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26742903  T
Q  350 atagaagaatggaaatctatattagata 377  Q
    |||| ||||||  | ||| |||||||||    
T  26742904 atagcagaatgtgagtctttattagata 26742931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 28182127 - 28182226
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||||| ||| |||| |||||  |||||| | |||| ||||| || | |||||||||||||||||||||| |||| ||||||  | |||||||||||    
T  28182127 gcaattgcaggttttggctggaggaattgattggtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagtaggtcatgggatt 28182226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 27697536 - 27697450
Alignment:
Q  290 tatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagat 376  Q
    |||| ||||||||||||||| ||| ||||| |||| ||| |    |||||||||||||| |||||||||||||| | ||||||||||    
T  27697536 tatgtttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagat 27697450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 28787433 - 28787543
Alignment:
Q  253 ttcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatata 352  Q
    |||||| ||||| ||| ||||| | |||||| |  |||||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  |||    
T  28787433 ttcaagttatgaagacgttttaaatcgtgcagtttcttatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgata 28787532  T
Q  353 gaagaatggaa 363  Q
    |||||||||||    
T  28787533 gaagaatggaa 28787543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 27680158 - 27680255
Alignment:
Q  266 gacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    ||||||||| |||||||| | || ||||||| |||||||||||| ||||||||| |||| ||| |    |||||||||||||  |||||||| |||||    
T  27680158 gacattttaaaccgtgcagttgcatatgcttttggccttccgttagttttagaagtagtgggttctaacttgtttggaaagagcatagaagattggaa 27680255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 376
Target Start/End: Original strand, 28244016 - 28244113
Alignment:
Q  279 gtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagat 376  Q
    ||||| || ||||||||||||||||||| |||| ||||||| |||| ||| |    || |||||||| ||||||| |||||||||||||  |||||||    
T  28244016 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagat 28244113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 28243855 - 28243903
Alignment:
Q  118 agtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  28243855 agtgatcgttaccactcgagacagacatttgctaaaaagtcatgggatt 28243903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 29823969 - 29824005
Alignment:
Q  268 cattttagaccgtgcaatagcttatgcttctggcctt 304  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29823969 cattttagaccgtgcaatagcttatgcttctgacctt 29824005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 26849944 - 26850031
Alignment:
Q  290 tatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagata 377  Q
    ||||||||||||||||| || | ||||||| |||| ||| ||   ||||||||||||| ||||||||||||  | |||| ||||||||    
T  26849944 tatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagaagaatgcgagtctacattagata 26850031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 26960317 - 26960444
Alignment:
Q  250 tgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaat 349  Q
    ||||||||| |||||| |||||||| |||||||| |    ||||||||||||||||| || | ||||||| |||| ||| ||   |||||||| |||| |    
T  26960317 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggcaagagt 26960416  T
Q  350 atagaagaatggaaatctatattagata 377  Q
    |||| ||||||  | ||| |||||||||    
T  26960417 atagcagaatgtgagtctttattagata 26960444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 27610091 - 27609984
Alignment:
Q  269 attttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatcta 368  Q
    |||||| |||||||  | || |||||||||||||||||||| ||| ||||| |||| ||| |    |||||||||||||| ||||| |||||||| | ||    
T  27610091 attttaaaccgtgctgttgcatatgcttctggccttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaggaatggaagtata 27609992  T
Q  369 tattagat 376  Q
     |||||||    
T  27609991 cattagat 27609984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 26938097 - 26938159
Alignment:
Q  126 ttaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatg 188  Q
    |||||||||||||| ||||||||||| || ||||||||||| | |||| ||||  ||||||||    
T  26938097 ttaccactcgagacaaacatttgctatcatgtcatgggattgaaagaatatatgtagtagatg 26938159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 28793554 - 28793664
Alignment:
Q  253 ttcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatata 352  Q
    |||||| ||||| ||| ||||| | |||||| |  | |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  |||    
T  28793554 ttcaagttatgaagacgttttaaatcgtgcagtttcgtatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgata 28793653  T
Q  353 gaagaatggaa 363  Q
    |||||||||||    
T  28793654 gaagaatggaa 28793664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 25074918 - 25074975
Alignment:
Q  109 tggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||| ||| |||||||||||||||||| |||||||| || ||  ||||||||||    
T  25074918 tggcagcagagtcatcattaccactcgagacaaacatttgttatcatctcatgggatt 25074975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 25075059 - 25075128
Alignment:
Q  250 tgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaa 319  Q
    ||||||||| |||||| |||||||| ||||||||||    ||||||||||||||||| || | |||||||    
T  25075059 tgattcaagctatgattacattttaaaccgtgcaattaaatatgcttctggccttccattagctttagaa 25075128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 26950794 - 26950851
Alignment:
Q  109 tggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||| ||| |||||||||||||| ||| |||||||| || || |||||||||||    
T  26950794 tggcagcagagtcatcattaccactcgtgacaaacatttgttatcatgtcatgggatt 26950851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 26976002 - 26976059
Alignment:
Q  109 tggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||| ||| |||||||||||||||||| |||| |||||| || ||||| |||||    
T  26976002 tggcagcagagtcatcattaccactcgagacaaacaattgctatcaggtcatcggatt 26976059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 27426565 - 27426492
Alignment:
Q  287 gcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatg 360  Q
    ||||||||||||||||||||| | ||| ||||| |||| ||| |    |||||||||||||| |||||||||||    
T  27426565 gcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatg 27426492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 376
Target Start/End: Complemental strand, 5090081 - 5089814
Alignment:
Q  109 tggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatcc 208  Q
    |||||||| ||| |||||||||||||||||| |||| ||||||| | ||||||||||| ||| || |||  |||||||||   |||||  ||  ||| |     
T  5090081 tggcagcagagtcatcattaccactcgagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagct 5089982  T
Q  209 cttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgt 308  Q
    ||| ||||||| |||||||| ||||||||| ||||||  | | || |||| ||||| |  |||||| ||||||   || ||||||||||||||||||| |    
T  5089981 cttcaattattaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccat 5089882  T
Q  309 tggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagat 376  Q
    ||| ||||||| | || ||| ||   |||||||||||| |||||||| ||||||||||| || |||||    
T  5089881 tggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagat 5089814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 18074990 - 18075063
Alignment:
Q  287 gcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatg 360  Q
    ||||||||||||||||||||| | ||| ||||| |||| ||| |    |||||||||||||| |||||||||||    
T  18074990 gcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatg 18075063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 368
Target Start/End: Original strand, 16691876 - 16692177
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||||||||||||  |||| |   |||| | |||| ||||| || | ||| |||||||||||||||||| |||| || |||||||||||||| |||    
T  16691876 gcaattgcaagttatggttggagagcccgattggtttggtcctggaagtagagtcatcattaccactcgagacaaacacttactaacaagtcatggtatt 16691975  T
Q  167 catagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatg 266  Q
     |||||| |||| |||| ||||   ||||| |   |||| | || ||| |||| ||||||||  |||||||| |||  | ||  |||||||| |  ||      
T  16691976 gatagaatatatgaagtggatggtttaaatggagaagaagctctagaactattgaggtggaagacttttaaaaataacaaagtcgattcaagtttcgagt 16692075  T
Q  267 acattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatc 366  Q
    |||||||| |   ||   || ||||||||||||||||||| || | ||||||| |||||||  |    ||||||||||||||||||||||||||||||||    
T  16692076 acattttaaaatatgttgtaacttatgcttctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatc 16692175  T
Q  367 ta 368  Q
    ||    
T  16692176 ta 16692177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 35736 - 35835
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||||| ||| |||||||||   |||||| | |||| ||||| || | |||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  35736 gcaattgcaggttttggcgggagaaattgattggtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggatt 35835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 28415 - 28558
Alignment:
Q  23 cgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtga 122  Q
    ||||||||||| || |||||||| || || ||| ||||  | | ||||||||  ||| |||| |||||  |||||| | |||| ||||| || | |||||    
T  28415 cgaaagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttggctggaggacttgattggtttggtcctggaagtaaagtga 28514  T
Q  123 tcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||||||||||| || |||| |||||| ||||||||||||||    
T  28515 tcattaccactcgaaacaaacaattgctagcaagtcatgggatt 28558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 376
Target Start/End: Original strand, 44178 - 44275
Alignment:
Q  279 gtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagat 376  Q
    ||||| || ||||||||||||||||||| |||| ||||||| |||| ||| |    || |||||||| ||||||| |||||||||||||  |||||||    
T  44178 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaaatctgcattagat 44275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 44017 - 44065
Alignment:
Q  118 agtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    ||||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  44017 agtgatcgttaccactcgagacagacatttgctaaaaagtcatgggatt 44065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 367
Target Start/End: Complemental strand, 57467 - 57167
Alignment:
Q  67 gcaattgcaagttatggcgggaggggttgatttggttgggcctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggatt 166  Q
    |||||| || ||| |||| |||||  |||||| | |||| ||||| || | |||||||||||||||||||||| |||| |||||| || |||||||||||    
T  57467 gcaattacaggttttggctggaggacttgattggtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagcaggtcatgggatt 57368  T
Q  167 catagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatg 266  Q
     | |||  |||| || |||||  | |||||  || |||| | |||||||| || |||||||| ||||| ||| |||  | ||   || |||  |  ||      
T  57367 gaaagagcatatgaaatagataagttaaatgagaaagaagctcttgaattgttgaggtggaatgctttcaaaaataacaaagtcaatccaaatttcgaca 57268  T
Q  267 acattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatc 366  Q
    || ||||| ||| |||| || |||||||||| |||||||| ||||  |||||| |||| ||| |    ||||||||||||||||||| ||||||||||||    
T  57267 acgttttacaccttgcagtaacttatgcttcaggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatc 57168  T
Q  367 t 367  Q
    |    
T  57167 t 57167  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 17992447 - 17992267
Alignment:
Q  8 aagcaaaggctaggacgaaagaaagtacttttgattcttgacgacgttgacaacatgaggcaattgcaagttatggcgggaggggttgatttggttgggc 107  Q
    |||||||||||| | | ||||||||| || |||||||| || ||| | |||||  | | ||||||||| ||| |||  |||| |  || || | |||| |    
T  17992447 aagcaaaggctatgtcaaaagaaagttctcttgattctcgatgacatcgacaaactaaagcaattgcaggttttggttggagagcctggttggcttggtc 17992348  T
Q  108 ctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatg 188  Q
     |||||||| ||| |||||||||||||||||| |||||||| ||||| ||||||||||| | | || |||| |||||||||    
T  17992347 gtggcagcagagtcatcattaccactcgagacaaacatttgttaacatgtcatgggattaaaacaatatatgaagtagatg 17992267  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 363
Target Start/End: Original strand, 3280720 - 3280964
Alignment:
Q  119 gtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaataggatagaatcccttgaattat 218  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||| |   || |||| || |||||| | |||||| |  |||| | ||||||||      
T  3280720 gtgatcattaccactcgagacaaacacttgttatcaagtcatgggattgaactaacatatgaaatagatgagttaaataaggaagaagcacttgaattgc 3280819  T
Q  219 ttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttaga 318  Q
    |||  ||||| |||||||||  ||    || | ||||||| |||||  || || || |||| ||| ||  |||||||||||||||||| ||||  |||||    
T  3280820 ttacatggaaggcttttaaaagtaagcaagttaattcaagttatgagcacgttctaaaccgcgcagtaaattatgcttctggccttccattggcattaga 3280919  T
Q  319 attagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    | || ||||| ||   |||||||||||||||||| |||| |||||    
T  3280920 agtattaggttccaacttgtttggaaagaatataaaagagtggaa 3280964  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 267302 - 267217
Alignment:
Q  278 cgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    |||||| | ||||||||||||||||||||||| ||||||||| | || ||| |    |||||||||||||  ||||||||||||||    
T  267302 cgtgcagttgcttatgcttctggccttccgttagttttagaaattgtgggttctaacttgtttggaaagagcatagaagaatggaa 267217  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 26136952 - 26137013
Alignment:
Q  122 atcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagt 183  Q
    ||||||||||| |||||| ||||||||||| || ||||||||||| | |||| |||| ||||    
T  26136952 atcattaccacccgagacaaacatttgctatcatgtcatgggattaaaagaatatatgaagt 26137013  T

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Target: scaffold0277 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 3830 - 3787
Alignment:
Q  122 atcattaccactcgagaccaacatttgctaacaagtcatgggat 165  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||    
T  3830 atcattaccactcgagacaaacacttgctaagaagtcatgggat 3787  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 3699 - 3589
Alignment:
Q  253 ttcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatata 352  Q
    |||||| ||||| ||| ||||| | |||||| |  | |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  |||    
T  3699 ttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgata 3600  T
Q  353 gaagaatggaa 363  Q
    |||||||||||    
T  3599 gaagaatggaa 3589  T

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Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 12662 - 12552
Alignment:
Q  253 ttcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatata 352  Q
    |||||| ||||| ||| ||||| | |||||| |  | |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  |||    
T  12662 ttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgata 12563  T
Q  353 gaagaatggaa 363  Q
    |||||||||||    
T  12562 gaagaatggaa 12552  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 8682 - 8792
Alignment:
Q  253 ttcaagatatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatata 352  Q
    |||||| ||||| ||| ||||| | |||||| |  | |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  |||    
T  8682 ttcaagttatgaagacgttttaaatcgtgcagtttcatatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgata 8781  T
Q  353 gaagaatggaa 363  Q
    |||||||||||    
T  8782 gaagaatggaa 8792  T

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Target: scaffold1870 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 1 - 74
Alignment:
Q  290 tatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  ||||||||||||||    
T  1 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaa 74  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 60798 - 60871
Alignment:
Q  287 gcttatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatg 360  Q
    ||||||||||||||||||||| | ||| ||||| |||| ||| |    |||||||||||||| |||||||||||    
T  60798 gcttatgcttctggccttccggtagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatg 60871  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 16441105 - 16441194
Alignment:
Q  107 cctggcagcatagtgatcattaccactcgagaccaacatttgctaacaagtcatgggattcatagaaaatatcaagtagatgcgctaaat 196  Q
    ||||| |||| ||| |||||||| ||||| ||| |||| |||||| ||||||||||| || | |||| |||| |||| ||||| ||||||    
T  16441105 cctggtagcagagttatcattacaactcgggacaaacagttgctagcaagtcatggggttgaaagaacatatgaagtggatgcactaaat 16441194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 29272788 - 29272715
Alignment:
Q  290 tatgcttctggccttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaa 363  Q
    |||||||| |||||||| || ||||||||| |||| ||| ||   |||||||||||||  ||||||||||||||    
T  29272788 tatgcttcgggccttcccttagttttagaaatagtgggttccaacttgtttggaaagaggatagaagaatggaa 29272715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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