View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_16 (Length: 371)
Name: NF0819_low_16
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 29 - 353
Target Start/End: Original strand, 23921636 - 23921960
Alignment:
| Q |
29 |
acccataatttccctctcaagcatcctcctccattcacttcccttcggtatgacgtcgtccaacatatcataaatagcagaaaaattaaacagtgcctcc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23921636 |
acccataatttccctctcaagcatcctcctccattcacttcccttcggtatgacggcatccaacatatcataaatagcagaaaaattaaacagtgcctcc |
23921735 |
T |
|
| Q |
129 |
ctaaaccttgaagcaaagaaaggtgaattatatgatccattaatagtagacagagtgaaaatatccggatttatcttcctaatcaaatgcagaaccacgt |
228 |
Q |
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| T |
23921736 |
ctaaaccttgtagcaaagaaaggtgaattatatgatccattaatagtagacagagtgaaaatatccggatttatcttcctaatcaaatgcagaaccacgt |
23921835 |
T |
|
| Q |
229 |
ttctaggactattaacttcaatactctcatctagtaagttcttaaacctccccacacagttcacagcaattacgtcgttgcacttgattttaagatcttc |
328 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
23921836 |
ttctaggactattaatctcaatactctcatctagtaaattcttaaacctccccacacagttcacagcaactacctcgttgctcttgattttaagatcttc |
23921935 |
T |
|
| Q |
329 |
aactcgaattgtttcccatttccgc |
353 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
23921936 |
aactcgaattgtttcccatttccgc |
23921960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 23905348 - 23905024
Alignment:
| Q |
29 |
acccataatttccctctcaagcatcctcctccattcacttcccttcggtatgacgtcgtccaacatatcataaatagcagaaaaattaaacagtgcctcc |
128 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23905348 |
acccataatttccctctcaatcatcctcctccattcacttcccttcggtatgacggcgtccaacatatcataaatagcagaaaaattaaacagtgcctcc |
23905249 |
T |
|
| Q |
129 |
ctaaaccttgaagcaaagaaaggtgaattatatgatccattaatagtagacagagtgaaaatatccggatttatcttcctaatcaaatgcagaaccacgt |
228 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23905248 |
ctaaaccttgtcgcaaagaaaggtgaattatatgatccattaataatagacagagcgaaaatatccggatttatcttcctaatcaaatgcagaaccacgt |
23905149 |
T |
|
| Q |
229 |
ttctaggactattaacttcaatactctcatctagtaagttcttaaacctccccacacagttcacagcaattacgtcgttgcacttgattttaagatcttc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
23905148 |
ttctaggactattaacttcaatactctcatctagtaaattcttaaacctccccacacagttcacagcaactacctcgttgctcttgattttaagatcttc |
23905049 |
T |
|
| Q |
329 |
aactcgaattgtttcccatttccgc |
353 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
23905048 |
aactcgaattgtttcccatttccgc |
23905024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 90 - 346
Target Start/End: Original strand, 23911682 - 23911938
Alignment:
| Q |
90 |
aacatatcataaatagcagaaaaattaaacagtgcctccctaaaccttgaagcaaagaaaggtgaattatatgatccattaatagtagacagagtgaaaa |
189 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||| || ||||||||||||||||||| | | ||| || |||| |
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| T |
23911682 |
aacatatcataaagagcagaaaaatgaaacagtgcctccctaaaccgtgtagcaaagaatggcgaattatatgatccattaacaattgactgaacaaaaa |
23911781 |
T |
|
| Q |
190 |
tatccggatttatcttcctaatcaaatgcagaaccacgtttctaggactattaacttcaatactctcatctagtaagttcttaaacctccccacacagtt |
289 |
Q |
| |
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|| | ||||||||||| || || |||||||||||| ||||||||||||| || ||||||||||| ||||| | ||| |||||||| ||| || | |||| |
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| T |
23911782 |
tagcaggatttatctttctgattaaatgcagaaccgcgtttctaggactgttcacttcaatactttcatccaataaattcttaaatctcatcaaagagtt |
23911881 |
T |
|
| Q |
290 |
cacagcaattacgtcgttgcacttgattttaagatcttcaactcgaattgtttccca |
346 |
Q |
| |
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|||| ||| || || |||| ||||||||||||||| || ||| ||||||||||||| |
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|
| T |
23911882 |
cacaacaacaacctcattgctcttgattttaagatcctccacttgaattgtttccca |
23911938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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