View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_2 (Length: 590)
Name: NF0819_low_2
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 124 - 575
Target Start/End: Complemental strand, 31372382 - 31371931
Alignment:
| Q |
124 |
tggatgcatacataaatttgtgatcacaaaccaaacaattcatttgtctttcttgtttccaagaaacaaattatcaagtatgtcatgaatgtcaaacatt |
223 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372382 |
tggatacatacataaatttgtgatcacaaaccaaacaattcatttgtctttcttgtttccaagaaacaaattatcaagtatgtcatgaatgtcaaacatt |
31372283 |
T |
|
| Q |
224 |
ccatactcaatatactcataagcatcagttttaagaaaatcctgaaacctcccaatgaagattccatacgctgggagcaaggtattcttgagagattcaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372282 |
ccatactcaatatactcataagcatcagttttaagaaaatcctgaaacctcccaatgaagattccatacgctgggagcaaggtattcttgagagattcaa |
31372183 |
T |
|
| Q |
324 |
tcatttctttccttagcttataataatgaatggaccatgtgcactgaactctgcatgtctctgtaaagtgcttgttaaacaaactaatcttttctttaat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372182 |
tcatttctttccttagcttataataatgaatggaccatgtgcactgaactctgcatgtctctgtaaagtgcttgttaaacaaactaatcttttctttaat |
31372083 |
T |
|
| Q |
424 |
caaatctactacaaaattaacttccatggaatcattgatatccaacttcaaaaattctaacaccttatcccatgagtttctttgatagagttcaatgttt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31372082 |
caaatctactacaaaattaacttccatggaatcattgatatccaacttcaaaaattctaacaccttatcccatgagtttctttgatagagttcaatgttt |
31371983 |
T |
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| Q |
524 |
tgttggacctttgctctgattttttgtaaccaatcatcgccaaaaactgcat |
575 |
Q |
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| T |
31371982 |
tgttggacctttgctctgattttttgtaaccaatcatcgccaaaaactgcat |
31371931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 124 - 585
Target Start/End: Complemental strand, 31324951 - 31324490
Alignment:
| Q |
124 |
tggatgcatacataaatttgtgatcacaaaccaaacaattcatttgtctttcttgtttccaagaaacaaattatcaagtatgtcatgaatgtcaaacatt |
223 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324951 |
tggatacatacataaatttgtgataacaaaccaaacaattcatttgtttttcttgtttccaagaaacaaattatcaagtatgtcatgaatgtcaaacatt |
31324852 |
T |
|
| Q |
224 |
ccatactcaatatactcataagcatcagttttaagaaaatcctgaaacctcccaatgaagattccatacgctgggagcaaggtattcttgagagattcaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324851 |
ccatactcaatatactcataagcatcagttttaagaaaatcctgaaacctcccaatgaagattccatacgctgggagcaaggtattcttgagagattcaa |
31324752 |
T |
|
| Q |
324 |
tcatttctttccttagcttataataatgaatggaccatgtgcactgaactctgcatgtctctgtaaagtgcttgttaaacaaactaatcttttctttaat |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31324751 |
tcatttctttccttagcttataataatgaatggaccatgtgcactgaactctgcatgtctctgtaaagtgcttgttaaacaaactaatcttttctttcat |
31324652 |
T |
|
| Q |
424 |
caaatctactacaaaattaacttccatggaatcattgatatccaacttcaaaaattctaacaccttatcccatgagtttctttgatagagttcaatgttt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324651 |
caaatctactacaaaattaacttccatggaatcattgatatccaacttcaaaaattctaacaccttatcccatgagtttctttgatagagttcaatgttt |
31324552 |
T |
|
| Q |
524 |
tgttggacctttgctctgattttttgtaaccaatcatcgccaaaaactgcattcatctcact |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
31324551 |
tgttggacctttgctctgattttttgtaaccaatcatcgccaaaaactgcatccatatcact |
31324490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 31325041 - 31325006
Alignment:
| Q |
34 |
tgtcaatatcaaatattactattgttcttttattgg |
69 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31325041 |
tgtcaatatcaaatattactattgttcttttattgg |
31325006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 31372476 - 31372437
Alignment:
| Q |
30 |
cttgtgtcaatatcaaatattactattgttcttttattgg |
69 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
31372476 |
cttgtgtcaatatcaaatattacttttgttcttttattgg |
31372437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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