View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_20 (Length: 331)
Name: NF0819_low_20
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 9534580 - 9534868
Alignment:
| Q |
6 |
agcagcacagatagtgaaacacaagattaatactgttatgattttgtgtgtttagttttctacaaatttgtgctctttaaagggacggttttgataggct |
105 |
Q |
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| T |
9534580 |
agcaccacaaatagtgaaacacaagattaatactgttatgattttgtgtgtttagttttctacaaatttgtgctctttaaagggacggttttgataggct |
9534679 |
T |
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| Q |
106 |
tatccatgcctttgaaaatattggaaaagagaaagataagatggagacagctggtttaattggaagaaaggattgatggttataaacatcgnnnnnnnnn |
205 |
Q |
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| T |
9534680 |
tatccctgcctttgaaaatattggaaaagagaaagataagatggagacaactggtttaattggaagaaaggattgatggttataaacatcg-aaaaaaaa |
9534778 |
T |
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| Q |
206 |
tctagtatttcattg-tttttatgtactatttatatattcttttaaaggatattctaccacttaatggtattaatatcatactacatata |
294 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9534779 |
tctagtatttcattgttttttatgtactatttatatattcttttaaaggatattctaccacttaatggtattaatatcatactacatata |
9534868 |
T |
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