View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0819_low_23 (Length: 319)

Name: NF0819_low_23
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0819_low_23
NF0819_low_23
[»] chr4 (17 HSPs)
chr4 (78-231)||(18459684-18459837)
chr4 (79-192)||(7044728-7044841)
chr4 (78-231)||(7452420-7452572)
chr4 (78-224)||(610573-610719)
chr4 (78-172)||(23064998-23065092)
chr4 (78-171)||(24719517-24719610)
chr4 (78-233)||(4156763-4156917)
chr4 (78-150)||(5362020-5362092)
chr4 (192-235)||(27527782-27527825)
chr4 (78-150)||(8011273-8011345)
chr4 (77-177)||(9770111-9770211)
chr4 (73-143)||(9911475-9911546)
chr4 (82-150)||(6347121-6347189)
chr4 (82-110)||(7815561-7815589)
chr4 (137-233)||(10394569-10394665)
chr4 (78-150)||(13551679-13551751)
chr4 (78-110)||(37240262-37240294)
[»] scaffold0115 (1 HSPs)
scaffold0115 (71-204)||(35070-35195)
[»] scaffold0048 (2 HSPs)
scaffold0048 (78-230)||(48766-48917)
scaffold0048 (167-230)||(61360-61423)
[»] scaffold0036 (1 HSPs)
scaffold0036 (78-231)||(37142-37295)
[»] chr6 (14 HSPs)
chr6 (78-150)||(5422805-5422877)
chr6 (76-146)||(17250055-17250125)
chr6 (78-163)||(18491081-18491166)
chr6 (78-150)||(6943517-6943589)
chr6 (78-150)||(17543797-17543869)
chr6 (117-231)||(18490861-18490975)
chr6 (125-233)||(4841893-4842001)
chr6 (78-177)||(15528140-15528239)
chr6 (77-146)||(7918442-7918511)
chr6 (78-150)||(23897811-23897883)
chr6 (78-150)||(30912469-30912541)
chr6 (182-230)||(5422725-5422773)
chr6 (78-110)||(7223519-7223551)
chr6 (82-150)||(10509080-10509148)
[»] chr1 (12 HSPs)
chr1 (78-177)||(25146798-25146897)
chr1 (78-204)||(18337525-18337650)
chr1 (76-150)||(30619073-30619147)
chr1 (77-150)||(9128897-9128970)
chr1 (78-150)||(21846325-21846397)
chr1 (76-150)||(12800638-12800712)
chr1 (78-172)||(23528656-23528750)
chr1 (195-232)||(12003146-12003183)
chr1 (78-110)||(9327312-9327344)
chr1 (78-110)||(9352160-9352192)
chr1 (78-146)||(9955096-9955164)
chr1 (78-110)||(34478867-34478899)
[»] chr7 (18 HSPs)
chr7 (78-203)||(26565632-26565757)
chr7 (78-173)||(26281343-26281438)
chr7 (79-145)||(5058530-5058596)
chr7 (196-234)||(23618602-23618640)
chr7 (82-163)||(4574475-4574556)
chr7 (78-142)||(4247356-4247420)
chr7 (78-150)||(14055251-14055323)
chr7 (78-150)||(14365279-14365351)
chr7 (76-148)||(21846485-21846556)
chr7 (78-150)||(27221418-27221490)
chr7 (195-234)||(8254292-8254331)
chr7 (87-150)||(11324988-11325051)
chr7 (78-233)||(21157748-21157903)
chr7 (77-136)||(44944920-44944979)
chr7 (78-172)||(22687699-22687793)
chr7 (78-110)||(5715290-5715322)
chr7 (78-150)||(9685301-9685373)
chr7 (78-150)||(24725534-24725606)
[»] chr8 (7 HSPs)
chr8 (78-150)||(11879600-11879672)
chr8 (78-150)||(11897016-11897088)
chr8 (80-150)||(15294672-15294742)
chr8 (80-150)||(15475041-15475111)
chr8 (77-172)||(17646992-17647087)
chr8 (78-146)||(5922049-5922117)
chr8 (78-203)||(15761445-15761568)
[»] chr5 (9 HSPs)
chr5 (79-182)||(18843716-18843819)
chr5 (78-145)||(20923718-20923785)
chr5 (77-172)||(43234867-43234962)
chr5 (78-150)||(21059212-21059284)
chr5 (195-233)||(4289918-4289956)
chr5 (80-150)||(19042446-19042516)
chr5 (78-144)||(22645782-22645848)
chr5 (78-110)||(18051627-18051659)
chr5 (80-144)||(20320926-20320990)
[»] chr3 (11 HSPs)
chr3 (78-150)||(29067284-29067356)
chr3 (198-233)||(15806491-15806526)
chr3 (195-233)||(3041197-3041235)
chr3 (85-150)||(21963436-21963501)
chr3 (85-150)||(21985872-21985937)
chr3 (79-204)||(28135723-28135848)
chr3 (78-155)||(28745770-28745847)
chr3 (195-234)||(18013921-18013960)
chr3 (195-233)||(22970725-22970763)
chr3 (78-163)||(15806550-15806634)
chr3 (79-143)||(3449355-3449419)
[»] chr2 (8 HSPs)
chr2 (80-146)||(25539287-25539353)
chr2 (78-172)||(31238012-31238106)
chr2 (78-150)||(17995055-17995127)
chr2 (78-146)||(23863382-23863450)
chr2 (78-169)||(1404783-1404874)
chr2 (125-172)||(31023270-31023317)
chr2 (196-233)||(19257502-19257539)
chr2 (198-234)||(31023332-31023368)
[»] scaffold0182 (1 HSPs)
scaffold0182 (195-232)||(24299-24336)
[»] scaffold0510 (1 HSPs)
scaffold0510 (78-150)||(158-230)
[»] scaffold0079 (1 HSPs)
scaffold0079 (195-233)||(15030-15068)
[»] scaffold0042 (1 HSPs)
scaffold0042 (78-123)||(93788-93833)
[»] scaffold0017 (1 HSPs)
scaffold0017 (195-232)||(128945-128982)
[»] scaffold0186 (1 HSPs)
scaffold0186 (78-146)||(8443-8511)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 18459837 - 18459684
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||||||||| |||||||||||  ||| ||||||  ||| ||||||||||||||||||||||  ||| ||||||| ||||||||  |||    
T  18459837 attgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaataggcaa 18459738  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaat 231  Q
     || |||| ||||   ||||||||||||||||||||||||||| ||||||||||    
T  18459737 aatcctagtaaaagtccatcaaaatcgcacaaaatcgtgaaattcatacaaaat 18459684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 7044728 - 7044841
Alignment:
Q  79 ttgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaag 178  Q
    ||||||| ||||||||||||||||||||||||  ||  |||||| |||||||||||| ||||||||||||||  ||| ||||||| | ||||||| |||     
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaa 7044827  T
Q  179 attctaggaaaacc 192  Q
    || |||| ||||||    
T  7044828 atcctagtaaaacc 7044841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 7452420 - 7452572
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| ||||||||||||||||| ||||||  || ||||||| |||||||||||| ||||||||||| ||  ||| |  || | |||| |||  |||    
T  7452420 attgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactc-aatccatagtggattcctaatataggcaa 7452518  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaat 231  Q
     || |||  |||| ||| || |||||||||||||||||||||| ||||||||||    
T  7452519 aatcctaataaaatcgcttctaaatcgcacaaaatcgtgaaatacatacaaaat 7452572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 610719 - 610573
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||||| |||||||| |||||| |||  | | ||  |||||| ||  ||||||||| | ||| | ||||||||||  ||||| | ||||    
T  610719 attgttgtcaaaatcccaacttaaatactaaaattcatgactatgcgactttactcgttttcaacgattgaaatttattgcagaattttaaaacagacaa 610620  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccat 224  Q
     || |||   |||||||||||||||||||||||||||||||||||||    
T  610619 aatcctaatgaaaccgcatcaaaatcgcacaaaatcgtgaaatccat 610573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 23065092 - 23064998
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    ||||||||||||| |||||||||||| ||||||  ||  |||||| |||||| ||||| ||||||||||||||  ||||| ||||| ||||||||    
T  23065092 attgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaata 23064998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 24719517 - 24719610
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaat 171  Q
    |||||||| |||||| |||||||| | |||||| |||| ||||||  ||||||||||| ||||||||||||||  ||| ||||||| |||||||    
T  24719517 attgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccatagcagaatcctaaaat 24719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 4156763 - 4156917
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||||||||||||||| ||||| | |  |||||   ||||||||||| || |||||||||||    | | ||||| ||||||||| |||    
T  4156763 attgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaa 4156862  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
     ||  ||| |||| |||||||||||| ||| |||| ||||||| ||||||||||||    
T  4156863 aatcttagtaaaatcgcatcaaaatcacac-aaattgtgaaatacatacaaaatcg 4156917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 5362092 - 5362020
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||  ||||||||||||||    
T  5362092 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaa 5362020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 27527782 - 27527825
Alignment:
Q  192 cgcatcaaaatcgcacaaaatcgtgaaatccatacaaaatcgtg 235  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  27527782 cgcatcaaaatcgcataaaatcgtgaaatccctacaaaatcgtg 27527825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 8011345 - 8011273
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||| ||| ||||||||||| |||  ||||||  ||||| ||||| ||||||||||||||    
T  8011345 attgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaa 8011273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 9770111 - 9770211
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaaca 176  Q
    |||||||||||||||| |||||||||| ||||||   |  ||||||  ||||| ||||| ||||||||||||||  ||| | ||||| |||||||| |||    
T  9770111 tattgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagaca 9770210  T
Q  177 a 177  Q
    |    
T  9770211 a 9770211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 9911546 - 9911475
Alignment:
Q  73 agcatattgttgttaaaatcccgacttaaa-tcctaaaaatcaaaattttgaaactttattcactttcaacg 143  Q
    |||||||||||||  ||||||||| ||||| |||||||| |||| |||||| |||||| ||||| |||||||    
T  9911546 agcatattgttgtctaaatcccgatttaaaatcctaaaattcaagattttgcaactttcttcaccttcaacg 9911475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 6347189 - 6347121
Alignment:
Q  82 ttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||| ||||| || |||||||||||||||  ||  |||||| ||||||||| || ||||||||||||||    
T  6347189 ttgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaa 6347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 7815561 - 7815589
Alignment:
Q  82 ttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||||||||||||||||||||||||    
T  7815561 ttgttaaaatcccgacttaaatcctaaaa 7815589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 10394569 - 10394665
Alignment:
Q  137 ttcaacgactcaaaatcattgcagaatactaaaataaacaagattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    |||||||||| ||| |||| | |||||  |||||||  |||||| || | ||||  |||| |||||||||||||||| | |||||||| ||||||||    
T  10394569 ttcaacgacttaaattcatagtagaattttaaaataggcaagatccttgtaaaattgcattaaaatcgcacaaaatcattaaatccattcaaaatcg 10394665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 13551751 - 13551679
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||| ||||||| ||||||||| | |  ||||||  ||||| ||||| ||||||||||||||    
T  13551751 attgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaa 13551679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 37240262 - 37240294
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    ||||||||||||||||| |||||||||||||||    
T  37240262 attgttgttaaaatccctacttaaatcctaaaa 37240294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 35195 - 35070
Alignment:
Q  71 gaagcatattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaa 170  Q
    ||||||||||||||| |||||| |||||||||| |||||| ||| ||||||| |||||||||||| || ||||||||||| ||||||        || ||    
T  35195 gaagcatattgttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaattcattg--------tagaa 35104  T
Q  171 taaacaagattctaggaaaaccgcatcaaaatcg 204  Q
    ||| ||||||||||||||||||||||||| ||||    
T  35103 taagcaagattctaggaaaaccgcatcaacatcg 35070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 48917 - 48766
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| ||||| ||||||||||||||||||   | ||||||| |||||||||||| ||||||||||||||  |||   ||||| | |||| || |||    
T  48917 attgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa-aagcaa 48819  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaa 230  Q
     ||| ||| |||| |||||||||||||||||||| |||||||| |||||||||    
T  48818 aattatagtaaaatcgcatcaaaatcgcacaaaaacgtgaaattcatacaaaa 48766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 61423 - 61360
Alignment:
Q  167 aaaataaacaagattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaa 230  Q
    ||||||| ||| ||| ||| ||||  ||||||||||||||||||| |||||||| |||||||||    
T  61423 aaaataagcaaaattatagtaaaattgcatcaaaatcgcacaaaaacgtgaaattcatacaaaa 61360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 37295 - 37142
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| ||||| |||||||||||  ||||| ||| ||||||| || ||||||||| |||||| |||||||  ||| |||||||  |||||||   ||    
T  37295 attgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccatagcagaatcttaaaataggtaa 37196  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaat 231  Q
     || |||| |||| |||||||||||| ||||||||||||||||| || ||||||    
T  37195 aatcctagtaaaatcgcatcaaaatcacacaaaatcgtgaaatctatgcaaaat 37142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 5422877 - 5422805
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| ||||||||||||||||| |||||| |||  |||||| |||||||||||| ||||||||||||||    
T  5422877 attgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaa 5422805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 17250055 - 17250125
Alignment:
Q  76 atattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    |||||||||||||||||||||||||||||||||||  ||  |||||| |||||| ||||| ||||||||||    
T  17250055 atattgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgact 17250125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 18491166 - 18491081
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaat 163  Q
    |||| ||| ||||||||||||||||||||||||  || ||||||| | |||||||||| ||||||||||||||  ||| |||||||    
T  18491166 attgctgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaat 18491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 6943589 - 6943517
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||| ||||||||||||||    
T  6943589 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaa 6943517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 17543869 - 17543797
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||| ||||||||||||||||| |||  ||||||  ||||| ||||||||||||||||||||    
T  17543869 attgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaa 17543797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 18490975 - 18490861
Alignment:
Q  117 attttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaagattctaggaaaaccgcatcaaaatcgcacaaaatcgtg 216  Q
    |||||| |||||||||||| |||||||||| |||  ||| ||| ||| | ||||   |||| || |||| ||||  || |||||||| ||||||||||||    
T  18490975 attttgcaactttattcaccttcaacgactgaaacccatagcataatcccaaaaatgacaaaatcctagtaaaattgcttcaaaatcacacaaaatcgtg 18490876  T
Q  217 aaatccatacaaaat 231  Q
    |||||||||||||||    
T  18490875 aaatccatacaaaat 18490861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 4842001 - 4841893
Alignment:
Q  125 actttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaagattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccat 224  Q
    ||||||||||| ||||||||||||||  | | ||||||| | | ||||  ||| || |||| |||| ||| |||||||||||||||||||||| || |||    
T  4842001 actttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaatactagtaaaatcgcttcaaaatcgcacaaaatcgtgagattcat 4841902  T
Q  225 acaaaatcg 233  Q
    |||| ||||    
T  4841901 acaagatcg 4841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 15528239 - 15528140
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||| || ||||||| ||| |||| | |||||  ||||||| ||||    
T  15528239 attgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaa 15528140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 7918511 - 7918442
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    ||||||||| ||||||||||||||||| |||||| |||  ||||||  ||||| ||||| ||||||||||    
T  7918511 tattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgact 7918442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 23897811 - 23897883
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    ||||||| ||| |||||||||||||||||||||  ||  ||||||  ||||| ||||| ||||||||||||||    
T  23897811 attgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaa 23897883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 30912541 - 30912469
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||| ||||||||||||||| | |  ||||||  ||||| ||||| ||||||||||||||    
T  30912541 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaa 30912469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 5422773 - 5422725
Alignment:
Q  182 ctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaa 230  Q
    |||| |||| ||||||||||||||||||||| ||| ||| |||||||||    
T  5422773 ctagtaaaatcgcatcaaaatcgcacaaaattgtggaattcatacaaaa 5422725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 7223519 - 7223551
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||| ||||||||||||||||||||||||    
T  7223519 attgttgtcaaaatcccgacttaaatcctaaaa 7223551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 10509148 - 10509080
Alignment:
Q  82 ttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||| ||||||| |||||||||||||||| ||| || ||||  ||||| ||||| ||||| ||||||||    
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaa 10509080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 25146897 - 25146798
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| ||||||| |||||||||||||||| ||| |||||||  ||||| ||||| |||||||||||||| |||| | ||||| | |||||| ||||    
T  25146897 attgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagacaa 25146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 18337650 - 18337525
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||||||||||| | |||||||  ||  |||||| |||||||||||| ||||||||||||||  ||| ||||||  | ||||||  |||    
T  18337650 attgttgtcaaaatcccgacttata-cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggcaa 18337552  T
Q  178 gattctaggaaaaccgcatcaaaatcg 204  Q
     || |||| |||| |||||||||||||    
T  18337551 aatcctagtaaaatcgcatcaaaatcg 18337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 30619073 - 30619147
Alignment:
Q  76 atattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||| ||||||||||||||||||||||||  ||  ||||||  | ||| ||||| ||||||||||||||    
T  30619073 atattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaa 30619147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 9128970 - 9128897
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||||||||| ||||||||||||||||||| |  || |||  ||||| ||||| || |||||||||||    
T  9128970 tattgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaa 9128897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 21846397 - 21846325
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||||| |||||||||||||  ||  ||||||  ||||| ||||| ||||||||||||||    
T  21846397 attgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaa 21846325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 12800712 - 12800638
Alignment:
Q  76 atattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||| |||||||| ||||||||||||||| | |  |||||   ||||| ||||| ||||||||||||||    
T  12800712 atattgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaa 12800638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 23528656 - 23528750
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    |||||||| |||||||| ||||||||| ||||| |||  ||||||  ||||| ||||  ||||||||||||||  ||| | ||||| ||||||||    
T  23528656 attgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaata 23528750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 12003183 - 12003146
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatc 232  Q
    |||||||||||||||||||||||||||| | |||||||    
T  12003183 atcaaaatcgcacaaaatcgtgaaatccgttcaaaatc 12003146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 9327344 - 9327312
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||||||||||| ||||||||||||||||    
T  9327344 attgttgttaaaatcctgacttaaatcctaaaa 9327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 9352192 - 9352160
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||| ||||||||||||||||||||||||    
T  9352192 attgttgtcaaaatcccgacttaaatcctaaaa 9352160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 9955164 - 9955096
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    |||||||| |||||||| ||||||||||||||| | |  ||||||  ||||| ||||| ||||||||||    
T  9955164 attgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgact 9955096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 34478899 - 34478867
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    ||||||||||||||||||||||||||| |||||    
T  34478899 attgttgttaaaatcccgacttaaatcttaaaa 34478867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 26565757 - 26565632
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| ||||| | | |||||||| ||||| ||| ||||||| ||||||||||||||| ||||| ||||| |||| |||||||   ||||||  |||    
T  26565757 attgttgtcaaaattctgccttaaatcataaaattcagaattttgtaactttattcacttttaacgattcaaattcatagcagaatctcaaaatatgcaa 26565658  T
Q  178 gattctaggaaaaccgcatcaaaatc 203  Q
    ||| |||  |||| ||||||||||||    
T  26565657 gatcctactaaaatcgcatcaaaatc 26565632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 26281438 - 26281343
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataa 173  Q
    |||||||| ||||| |||||||||||| ||||| |||  ||||||  ||||| ||||| ||||||||||||||  ||||| ||||| | |||||||    
T  26281438 attgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataa 26281343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 5058530 - 5058596
Alignment:
Q  79 ttgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgac 145  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||  | ||| ||||| |||||||||    
T  5058530 ttgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgac 5058596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 23618640 - 23618602
Alignment:
Q  196 tcaaaatcgcacaaaatcgtgaaatccatacaaaatcgt 234  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  23618640 tcaaaatcgcacaaaatcgtgaaatccattcaaaatcgt 23618602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 4574475 - 4574556
Alignment:
Q  82 ttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaat 163  Q
    |||| ||||||  ||||||||||||||||  || |||||||  |||||| |||| |||||||| ||||| ||||||||||||    
T  4574475 ttgtgaaaatcatgacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaattcattgcagaat 4574556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 4247356 - 4247420
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaac 142  Q
    |||||||| |||||||| | ||||||||||||| |||  |||||| |||||| ||||||||||||    
T  4247356 attgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaac 4247420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 14055251 - 14055323
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||| ||||| |||||||||  ||| ||||||  ||||| ||||| ||||||||||||||    
T  14055251 attgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaa 14055323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 14365279 - 14365351
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||| ||||| |||||||||  ||| ||||||  ||||| ||||| ||||||||||||||    
T  14365279 attgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaa 14365351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 21846556 - 21846485
Alignment:
Q  76 atattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactca 148  Q
    |||||||||| ||||||||||||||||| |||||| |||  ||||||  ||||| ||||| ||||||||||||    
T  21846556 atattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactca 21846485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 27221418 - 27221490
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    ||||||||||||||||| |||||||| |||||| |||  ||||||  ||||| ||||  ||||||||||||||    
T  27221418 attgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaa 27221490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 8254331 - 8254292
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcgt 234  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  8254331 atcaaaatcacacaaaatcgtgaaatccattcaaaatcgt 8254292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 11324988 - 11325051
Alignment:
Q  87 aaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||||||||||||||||| |||  ||||||  | ||| ||||| ||||||||||||||    
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaa 11325051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 21157903 - 21157748
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    ||||||||  |||| | |||||||||| ||||| |||   |||||  |||||| |||||| ||||||||||||  ||| ||| ||| |||||| ||  ||    
T  21157903 attgttgtcgaaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccatagcaaaatcctaaaacaagaaa 21157804  T
Q  178 gattctaggaaaaccgcatcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
     ||  ||| |||| ||| | ||||| |||||||| |||||||| ||||||||||||    
T  21157803 aatcgtagtaaaatcgcttaaaaattgcacaaaaccgtgaaattcatacaaaatcg 21157748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 44944979 - 44944920
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcact 136  Q
    ||||||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||||    
T  44944979 tattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcact 44944920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 22687793 - 22687699
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    |||||||| |||||||||||||||||||||||| |||  | ||||  ||||| ||||  |||||| |||||||  ||| ||||||| | ||||||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaata 22687699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 5715290 - 5715322
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||| ||||||||||||||||||||||||    
T  5715290 attgttgtcaaaatcccgacttaaatcctaaaa 5715322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 9685373 - 9685301
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||| ||||||| ||||||||| | |  ||||||  ||||| ||||| ||||||||||||||    
T  9685373 attgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaa 9685301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 24725606 - 24725534
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| ||||||| ||||||||||||||||  ||| |||||   ||||| ||||| |||||| |||||||    
T  24725606 attgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaa 24725534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 11879600 - 11879672
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| ||||| | |||||||||||||||| |||  |||||| |||||| ||||||||||||||||||||    
T  11879600 attgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaa 11879672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 11897016 - 11897088
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| ||||| | |||||||||||||||| |||  |||||| |||||| ||||||||||||||||||||    
T  11897016 attgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaa 11897088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 15294672 - 15294742
Alignment:
Q  80 tgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||| ||||||||||||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaa 15294742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 15475041 - 15475111
Alignment:
Q  80 tgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||| |||||||||||||||||||||||| |||  ||||||  ||||| ||||| ||||||||||||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaa 15475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 17646992 - 17647087
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    ||||||||| ||||| |||||||||||| ||||| |||  ||||||  ||||| ||||| |||||||||||||| |||| | ||||| | ||||||    
T  17646992 tattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaata 17647087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 5922049 - 5922117
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    |||||||| ||||||||||||||||||||||||  ||  ||||||  ||||| ||||| ||||||||||    
T  5922049 attgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgact 5922117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 15761568 - 15761445
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaa 177  Q
    |||||||| |||||| ||||||||||||||||   ||  ||||||  | |||||| || |||||||||||||| |||| ||| ||| | ||||||  |||    
T  15761568 attgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggcaa 15761469  T
Q  178 gattctaggaaaaccgcatcaaaatc 203  Q
     ||||||| ||||  |||||||||||    
T  15761468 aattctagtaaaa--gcatcaaaatc 15761445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 18843716 - 18843819
Alignment:
Q  79 ttgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaag 178  Q
    ||||||||||||| ||||||||||||||| || |||  ||||||  ||||| ||||| ||||||||||||||  ||||| ||||| | |||||| ||||     
T  18843716 ttgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaa 18843815  T
Q  179 attc 182  Q
    ||||    
T  18843816 attc 18843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 20923718 - 20923785
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgac 145  Q
    |||||||| ||||||||||||||||||||||||  || |||||||  ||||| ||||| |||||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgac 20923785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 43234867 - 43234962
Alignment:
Q  77 tattgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    ||||||||| |||||||| ||||||||||||||| |||  ||||||  ||||| ||||| |||||||||| |||  ||| | ||||| ||||||||    
T  43234867 tattgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaata 43234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 21059284 - 21059212
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| |||||||||| |||||||||||||   |  ||||||  ||||| ||||||||||||||||||||    
T  21059284 attgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaa 21059212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 4289918 - 4289956
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  4289918 atcaaaatcgcacaaaatcgtgaaatccgttcaaaatcg 4289956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 19042516 - 19042446
Alignment:
Q  80 tgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||| |||||||| |||||||| |||||| | || ||||||  ||||| ||||| ||||||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaa 19042446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 22645848 - 22645782
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacga 144  Q
    |||||||| ||||||||||||||||||||||||  ||  ||||||  ||||| ||||| ||||||||    
T  22645848 attgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacga 22645782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 18051659 - 18051627
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaa 110  Q
    |||||||| ||||||||||||||||||||||||    
T  18051659 attgttgtcaaaatcccgacttaaatcctaaaa 18051627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 20320926 - 20320990
Alignment:
Q  80 tgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacga 144  Q
    |||||| |||||||| || |||||||||||| | || |||||| |||||| ||||| ||||||||    
T  20320926 tgttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 29067284 - 29067356
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||| ||||||||||||||||| |||||| |||  ||||||  ||||| ||||| ||||||||||||||    
T  29067284 attgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaa 29067356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 15806526 - 15806491
Alignment:
Q  198 aaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  15806526 aaaatcgcacaaaatcgtgaaatccatacaaaatcg 15806491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 3041197 - 3041235
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3041197 atcaaaatcgcacaaaatcgtgaaatccattcaaaatcg 3041235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 21963436 - 21963501
Alignment:
Q  85 ttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||||||||||||||||||| |||| |||||   ||||| ||||| || |||||||||||    
T  21963436 ttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaa 21963501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 21985872 - 21985937
Alignment:
Q  85 ttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||||||||||||||||||| |||| |||||   ||||| ||||| || |||||||||||    
T  21985872 ttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaa 21985937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 28135723 - 28135848
Alignment:
Q  79 ttgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaataaacaag 178  Q
    ||||||| ||||| |||| ||||||| ||||| |||  ||||||  ||||||||||||||||  ||||||||  ||| ||| ||| || |||||  |||     
T  28135723 ttgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccatagcaaaattctcaaataggcaaa 28135822  T
Q  179 attctaggaaaaccgcatcaaaatcg 204  Q
    ||||||| |||| | |||||||||||    
T  28135823 attctagtaaaatcacatcaaaatcg 28135848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28745770 - 28745847
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcat 155  Q
    |||||||| |||||||||| ||||||||||||| | |  ||||||  ||||| ||||| |||||||||||||| ||||    
T  28745770 attgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcat 28745847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 18013921 - 18013960
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcgt 234  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  18013921 atcaaaatcgcacaaaatcgtgaaatccatttaaaatcgt 18013960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 22970725 - 22970763
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  22970725 atcaaaatcgcacaaaatcatgaaatccattcaaaatcg 22970763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 15806634 - 15806550
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaat 163  Q
    |||||||| ||||||| ||||||||||||| ||  || |||||||  ||||||||||| ||||| ||||||||  ||| |||||||    
T  15806634 attgttgtcaaaatcc-gacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaat 15806550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 3449419 - 3449355
Alignment:
Q  79 ttgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacg 143  Q
    ||||||| |||||||||||||||||||||||| |||  ||||||  ||||| || || |||||||    
T  3449419 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg 3449355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 25539353 - 25539287
Alignment:
Q  80 tgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    ||||||||||||||||| ||||||||||||| |||| | |||| || ||| ||||| ||||||||||    
T  25539353 tgttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgact 25539287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 31238106 - 31238012
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    |||||||| ||||||||||||||||||||||||   |  ||||||  ||||| ||||| |||||||||||||| |||| | |||||  |||||||    
T  31238106 attgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaata 31238012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 17995055 - 17995127
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    |||||||||||||| |||||||||| |||||||  || |||||||  | |||||||||  |||||||||||||    
T  17995055 attgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaa 17995127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 23863450 - 23863382
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    |||||||| ||||||||||||||||| ||||||   | |||||||  ||||| ||||||||||||||||    
T  23863450 attgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgact 23863382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 1404783 - 1404874
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaaatcattgcagaatactaaa 169  Q
    |||||||| ||||||||||||||||| |||||| | |  ||||||  ||||| ||||| |||||||||| |||  ||||| ||||| |||||    
T  1404783 attgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaa 1404874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 31023270 - 31023317
Alignment:
Q  125 actttattcactttcaacgactcaaaatcattgcagaatactaaaata 172  Q
    |||||||||||||||||||||||||| |||| | ||||| ||||||||    
T  31023270 actttattcactttcaacgactcaaattcatagtagaatcctaaaata 31023317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 19257539 - 19257502
Alignment:
Q  196 tcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  19257539 tcaaaatcgcacaaaattgtgaaatccattcaaaatcg 19257502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 31023332 - 31023368
Alignment:
Q  198 aaaatcgcacaaaatcgtgaaatccatacaaaatcgt 234  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  31023332 aaaatcgcacaaaatcttgaaatctatacaaaatcgt 31023368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 24299 - 24336
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatc 232  Q
    |||||||||||||||||||||||||||||| |||||||    
T  24299 atcaaaatcgcacaaaatcgtgaaatccattcaaaatc 24336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 230 - 158
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgactcaaa 150  Q
    ||||||| ||| |||||||||||||||||||||  ||  ||||||  ||||| ||||| ||||||||||||||    
T  230 attgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaa 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 15068 - 15030
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatcg 233  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  15068 atcaaaatcgcacaaaatcgtaaaatccattcaaaatcg 15030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 93833 - 93788
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttga 123  Q
    |||||||| ||||||||||||||||||||||||  || ||||||||    
T  93833 attgttgtcaaaatcccgacttaaatcctaaaatccagaattttga 93788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 128982 - 128945
Alignment:
Q  195 atcaaaatcgcacaaaatcgtgaaatccatacaaaatc 232  Q
    |||||||||||||||||||||||||||| | |||||||    
T  128982 atcaaaatcgcacaaaatcgtgaaatccgttcaaaatc 128945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 8443 - 8511
Alignment:
Q  78 attgttgttaaaatcccgacttaaatcctaaaaatcaaaattttgaaactttattcactttcaacgact 146  Q
    |||||||| |||||||| |||||||||||||||  ||  ||||||  ||||| ||||| ||||||||||    
T  8443 attgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgact 8511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5674 times since January 2019
Visitors: 5758