View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0819_low_26 (Length: 303)
Name: NF0819_low_26
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_26 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 33 - 274
Target Start/End: Original strand, 15374296 - 15374538
Alignment:
| Q |
33 |
ctgtggagtttaaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaac |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15374296 |
ctgtggagcttaaagaaagaaagaaagaaaatgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaac |
15374395 |
T |
|
| Q |
132 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15374396 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattc |
15374495 |
T |
|
| Q |
232 |
aatgtttgtagttaaatatacgtgtagccgataatgtatgaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15374496 |
aatgtttgtagttaaatatacgtgtagccgatgatgtatgaag |
15374538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 46358331 - 46358093
Alignment:
| Q |
33 |
ctgtggagtttaaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaac |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46358331 |
ctgtggagcttaaagaaagaaagaaagaaaatgaatgatgcactttcagatgatatgggaatttaaatttaatt----gagataatttcaaaatttaaac |
46358236 |
T |
|
| Q |
132 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46358235 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattt |
46358136 |
T |
|
| Q |
232 |
aatgtttgtagttaaatatacgtgtagccgataatgtatgaag |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46358135 |
aatgtttgtagttaaatatacgtgtagccgataatgtatgaag |
46358093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 67704 - 67462
Alignment:
| Q |
33 |
ctgtggagtttaaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaac |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67704 |
ctgtggagcttaaagaaagaaagaaagaaaatgaatgatgcactttcagatgatatggaaatttaaatttaattcattgagataatttcaaaatttaaac |
67605 |
T |
|
| Q |
132 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
67604 |
aattccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattc |
67505 |
T |
|
| Q |
232 |
aatgtttgtagttaaatatacgtgtagccgataatgtatgaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
67504 |
aatgtttgtagttaaatatacgtgtagccgatgatgtatgaag |
67462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 44 - 274
Target Start/End: Original strand, 42147150 - 42147381
Alignment:
| Q |
44 |
aaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggt |
142 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42147150 |
aaagaaagaaagaaagaaaatgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggt |
42147249 |
T |
|
| Q |
143 |
tgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatatttaatgtttgtag |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42147250 |
tgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacagtgcttgcagttagctgtgaatttaaaatattcaatgtttgtag |
42147349 |
T |
|
| Q |
243 |
ttaaatatacgtgtagccgataatgtatgaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42147350 |
ttaaatatacgtgtagccgataatgtatgaag |
42147381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 34 - 270
Target Start/End: Complemental strand, 51492165 - 51491928
Alignment:
| Q |
34 |
tgtggagtttaaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaaca |
132 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51492165 |
tgtggagcttaaagaaagaaagaaagaaaatgaatgatgcagtttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaaca |
51492066 |
T |
|
| Q |
133 |
attccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattta |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
51492065 |
attccatggttgttgtatccaagctgtggagcttaaattttttctttagaaaagtatggtgggacggtgcttacagttagctgtgaatttaaaatattca |
51491966 |
T |
|
| Q |
233 |
atgtttgtagttaaatatacgtgtagccgataatgtat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51491965 |
atgtttgtagttaaatatacgtgtagccgataatgtat |
51491928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 9379411 - 9379295
Alignment:
| Q |
159 |
tggagcttaaatttttt-ctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatatttaatgtttgtagttaaatatacgtgta |
257 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
9379411 |
tggagcttaaatttttttctttagaaaagtatggtgggacggtgcttgcagttagctgtgaatttaaaatattcaatgtttgtagttaaatatatgtgta |
9379312 |
T |
|
| Q |
258 |
gccgataatgtatgaag |
274 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9379311 |
gccgataatgtatgaag |
9379295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 9379505 - 9379415
Alignment:
| Q |
35 |
gtggagtttaaagaaagaaagaaagaaa-tgaatgatgcactttcagatgatatgggaatttaaatttaattcattgagataatttcaaaa |
124 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9379505 |
gtggagcttaaagaaagaaagaaagaaaatgaatgatgtactttcagatgatatgagaatttaaatttaattcattgagataatttcaaaa |
9379415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5518 times since January 2019
Visitors: 5757