View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_28 (Length: 290)
Name: NF0819_low_28
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 7935180 - 7935025
Alignment:
| Q |
1 |
gagaaggtaaagtgctccaaaaatggatcatatatgtaacaccatcaccaaatacactatgtgtttctaactctacatcacctcatgaattataaagagt |
100 |
Q |
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| T |
7935180 |
gagaaggtaaagtgctccaaaaatggatcatatatgtaacaccatcaccaaatacactatgtatttctaactttacatcacctcatgaattataaagagt |
7935081 |
T |
|
| Q |
101 |
ttgagtggttatgctagaagtgtaacaaacctaaaatgagagcagctggaacccaa |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7935080 |
ttgagtggttatgctagaagtgtaacaaacctaaaatgagagcagctggaacccaa |
7935025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46999904 - 46999748
Alignment:
| Q |
1 |
gagaaggtaaagtgctccaaaaatggatcatatatgtaacaccatcaccaaatacactatgtgtttctaactctacatcacctcatgaattataaagagt |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| |||||||||| |
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| T |
46999904 |
gagaaggaaaagttctccaaaaatggatcatatatgtaaaaccatcaccaaatacacactgtgtttctaattctacaccccctcatgaggtataaagagt |
46999805 |
T |
|
| Q |
101 |
ttgagtggttatgctagaagtgtaacaaacctaaaatgagagcagctggaacccaac |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46999804 |
ttgagtggttatgctagaagtgtaacaaacctaaaatgagagcagctggaacccaac |
46999748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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